GgaINT0077361 @ galGal4
Intron Retention
Gene
ENSGALG00000004730 | CLIC2
Description
chloride intracellular channel protein 2 [Source:RefSeq peptide;Acc:NP_001026285]
Coordinates
chr4:1803086-1803498:-
Coord C1 exon
chr4:1803392-1803498
Coord A exon
chr4:1803268-1803391
Coord C2 exon
chr4:1803086-1803267
Length
124 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
GCTTTTCCCTGCCCACCCAGACC
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTACCCTCATCTGAGCCCCAAATATAAGGAGTCCTTCGACGTGGGCAGTGACATCTTCGCCAAGTTCTCGGCGTACATCAAGAACTCACGCAAGGAAGCAAATAGCA
Seq A exon
GTAAGGAGCAGGGGCTGGGGGCACGGCTAGGGCTTGGCTCCCTTAGGCACAGCCTGGCACAGGCTCGGGGGGGCGGTGAGGACCCGGCCCCTGCATGATGCCATGCTTTTCCCTGCCCACCCAG
Seq C2 exon
ACCTGGAGAAGGCTCTGCTGCGGGAGTTTCAGAGGCTGGATCAGTACCTCACCACCCCACTGCCCGAGGAGATCGACCAGGACAGCGTGGAGGACATCACCATCTCCAAGAGGAAATTCCTGGATGGGGACCACCTGACTCTGGCTGACTGCAACCTGCTGCCCAAGCTGCACATCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004730:ENSGALT00000007535:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.2=100)
A:
NA
C2:
PF134101=GST_C_2=FE(42.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGACATCTTCGCCAAGT
R:
TTGATGATGTGCAGCTTGGGC
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]