GgaINT0081778 @ galGal4
Intron Retention
Gene
ENSGALG00000014463 | ACTN2
Description
Alpha-actinin-2 [Source:UniProtKB/Swiss-Prot;Acc:P20111]
Coordinates
chr3:36978358-36981770:-
Coord C1 exon
chr3:36981692-36981770
Coord A exon
chr3:36978440-36981691
Coord C2 exon
chr3:36978358-36978439
Length
3252 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAAC
5' ss Score
2.22
3' ss Seq
CGTTTTTTTTTTTCACTCAGGAT
3' ss Score
9.34
Exon sequences
Seq C1 exon
CTGGAAAGATGGCCTTGGATTATGTGCACTTATCCACAGACACCGACCTGACCTTATTGACTACTCCAAGCTAAATAAG
Seq A exon
GTCAACAGTCTGGACGGTAGAGCATGTTGTCCTGCAGTGATTTGGCTCACTTCTGGTTTGCTTACTATGTTTTCTAAATGACAAGCTAAGGAGTGCATACTAATTCTAACTAATTTTCTATGCTTACTCCAAAAAATATTATTTGGAGGAAAGTAGGCCATGACAGTCCCTTGTCTGTCTTTCTTTTCCACTACAATGACTTCAGTATTAATTTCAGAAAATCCATTTCTCAGCAGCCAGGCAGTTTGTCTTCTATGGCACGCCGTAAGGATGTTAAATCAAATACACTGGAATTCTCAATTCACAACTGATACATAGTACAGACCATCTGCTATGTGTCCACTGTAAATAGCTGTGTAGATTGCAGAGCAGTAAACAAGGACAAGACTGATTAGAACAAACTCTTACCTAGGAATATGCAATTGTTAGGATTACATACAAAATATCCACCAGTTCTTACTTAACATTTCATTATACTTCTAACTATCCATCCAGGAAGTGCAAAAGAGATAGATACCATAACTTATTTAGGTAGCATCACATGGGGATTACAGACCCATTTTGTTATTTGGAAAGATGTATTTGTTCTAAAAGGTAGAAGCTACTGTGGTTTAAGGATGAGTAATGAAAATCAAGTAATAATCTTGGAATTTCTGGGGCATGTTACTGAAGAATAAAAACTGAAAAGACAGCGGCATGTTGGCATTTCATGTTAGATCTCAATAAATTCATATGTTTTTCTTCCTCAAAAATGAACATATATTGGATTCTTATGTAAATAATAGTGAAACAGAAAACCTAATCATGGATTTAATTTGTTGAGTGCCACTTCTATTTGGTGAGAGAAATTGGTAATCATAGATAATATTTTTCATTCCGTGCCCCTCTATGATAGATTCATTTTATTAGTGGAATCAGCTCCTATGATAAAGCCTTTTGTGAGGGAAAAGATGACAGAAAGAAGTAAGACAGTTTGAAAACTTTGTCTGCTTTATAATATGTTAAATTTGTGCTGGGACCCTCAAATTTTAGTGAAAATTAAATGAACCTAAACACACAGTGTTTAATTTAGGCAGTTGTTAAGACAACTGCAGACCTGAACAAAAGGACAAACAATAAACTGTCAGTACCAGATTATTCTCTAATTCTATATACATACTTTCGTATGGATGGACAGATTCATGGAATAGCTAAGCTACCTGTCTCTGTCTATGTATGCTCAAGCATGGCACAAAGAAGTTAGTCTGACTGAGTTTGTGCTTAGAAGAGTGGAACACAGTACAAGAAGCTTCTTGATAAAATCAGTCTACATTTGAGTGCTAAGAAAAGGGAATAGCACATATAGCACATAAGCAGATCTGCTTCAGCATTACTATTTCCCCTTTAGAGGTTTCCAAAATAAGAACAGGTCAGGTTTCAAATTGAGGCTGAGCTCTGGCACGTAAAGCACATGCAGAAAAATCCTAAAATAGATCTTGCTTTTCTGACTTGTCTGCATTTGACTGACTACTCATTTTGGTTACATTAACAGCTGTCTTGGTGTCTGGTTTCTTATCTCTTGCATGCTGTCTTTTATTTTTCTCACCAATGTGCTTTGTGTGAATTTGTAGCTGGAAAGATGGCCTTGCTTTCAACGCCCTTATTCATAGACACAGGCCTGATCTTCTTGACTATGACAAGTTAGATAAGGTATTTCTCTAGTTGTAGCAGAGACTTTTAGTTACTGTGGCTTATAGTTTTGTTTAAAAGTATGGGTGATTGGGATCTCCAGAAACTGCTGATTTTAAATACAGTTATTTCTTTATGGAGCAGCATTTACTCATGGACGTATCACCAGGCACACAAATAGGAGGTGCCCATCACTCATCCATAAGCGAAGTGTCTTAATCAAATCAGTAGGTCTCAGGTTTAGTGTATTTCTTCCCATTTAATTTCAGTAAGAGTTTTTGTATACACATTTAGTAAACGTTGTATTACATGTAGCGTCTCATGTAACAGCAGAAAGAAGTTAATGGGTTTTAAAGATTGTCCAGATTTCTTCTTATGTCAGTGATGCTCAAAACTGCTAAATGATGATGAAGTGAGAACTTACAATTAGAGACTTTGTGTTCCACTATAACCAAACTGTTAGGGCATTGTTACTTATGATACCTGGCATATATACGTGAGATCTAAGTAATTACTCCCATTTCATTATAACTAATCTTAATAAGTTCATTTCAAAGTGACAAAAGAAGCGTGCTTGAGTCTAGATCCTTTTACAGGGAGTGTTTGCATTCAAACAGAAGCCCTGTAAGTTCACTGCAGCAAACTTGTTAACTTTTTCCAGTCCCCTCCAGCTTCTCCAATTTTGTTTCTCTGCCCTGTCTTTCTAAACTATCTCTGTAGACATTGACATTGTTCATAGTAGCTGTGATCATTTAGTAGTTTTTGAATATTTGAAAATAATAATAACATTAATGTCATGGACTGCCATTTCACATAGGATATTTTCACTCCAAGCTGATATTAGAAGCCTGACTTAAGAGCATCCCTCATCTGATATGGTCTTCTTTTGTCAGCAATTGTTGTCTGTAGTGTAAGAAACGAAATGTATGCTGTTTGACTGAATTTTTCTCACTGCTTCCTTTCTTTTTTCTTCAAAAAACAAAACCTCTAAACAAGAGAAAACTCTTGATTTTCAACAGCTCTAAAATTCAGCTTACACACATTAGTTTCAAATTTGGCTATCCAAGTCAAAACTAGATTTTGTTCCTTCGGGGTAGCTGTTCTGTTTGTGATTCCCCTTTTCCATGCATACATTGGACCAACAGAGAAATTGTTATCTCAATATAATTTTTATCATTGTAATACAATGTTTACCAGGTGTCAAAGTGTGATTTTTGTGATGAACAGTCTAGTATACCCTACTGGACCAGAGACCGTGACTGTATGTTTTACTGCAATTCTTCATTCAGAATTAGCTCTTTATGAGTATACATTTCATATGTTATCTACATTTCCCTTCAGAACGTATTGGAATGTATATAGAATTAGAGAGTTCTAGTGTCTTATTAATGTTTACCTTTGAAAGAATAGTAGTAGATAGATTAAAGGGCCATAGACTCATACTTTGCTTTTTGTATAACAGTAACTGTGATTCTAATTTACAATTGGGAAAAACAGAGTAAGTTTTAGTGCACCTACTGCAGTAGTCTTGCTTCAAAGAAAACTCTGTATTTTTGACTTGTTGCGTTTTTTTTTTTCACTCAG
Seq C2 exon
GATGACCCCATAGGAAATATCAACCTTGCCATGGAAATTGCTGAGAAACATCTGGATATCCCTAAGATGTTGGATGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463:ENSGALT00000023354:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(25.0=100)
A:
NA
C2:
PF0030726=CH=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]