GgaINT0082265 @ galGal3
Intron Retention
Gene
ENSGALG00000016690 | F1NFF7_CHICK
Description
NA
Coordinates
chr3:111591643-111592638:+
Coord C1 exon
chr3:111591643-111591803
Coord A exon
chr3:111591804-111592464
Coord C2 exon
chr3:111592465-111592638
Length
661 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATT
5' ss Score
7.06
3' ss Seq
TGCATCTGTGCATCTTACAGCTG
3' ss Score
8.45
Exon sequences
Seq C1 exon
GGAAGCCCCTTGAGATGACTCACTTGATGAATTCTGCTGTTGCTAATGTCATTGTATCCATATTGCTTGGAAAACGGTTTGAATATGAAGACCCCACATTCAAAAGACTTGTGTCACTGATAAATGAAAATATGAGGCTTTTTGGAAGTCCATCAGTGTCG
Seq A exon
GTAATTCATAGTGTTTGAATGTTTCCCTTCAAAATCATGCACAACATAGAGTGATAACAGTGCATCTACTCCACTCTCAGTTACTGAAATTCATCTATCTGTATATGGCAAATGCATCCTGAAGTGGCAGGAAGAAGACCTTTGGTACTACATACGGGTTTCTCTTAGTAGTTCTCAGAGTGTAGCTGCACTTCATGAAGAAGAATTGAAGAACATGCTATACAATAAGAACAGAGCATCCCCAGATGACAGAAGTTGCCCATTATTTCCTATCTCCCATACAAAGAACAAAGTCAAAACTGGAAAAGTCTGCAAGTGTCCCTCAAGTTGCAAATGTCTCTTGAGACACCCAGCTCCAACCAAGTTGGAGAGAGAGGAATGAGAAATATAAGTGTAGAGAGGTAGGAATTTATGTCAAAGACAAATGCATAAGCATGGAATTTCTAGGCCATCAGCTAGTGTGATTGATATGTAAGAGGGAGTAAATTTTAACAATTTTACTTAGTTGGGAAGGGAAGAAAGTGGGTAAAGAGTGTTTTGTGTCAAGATTATAAGGCTATACAATATTTTCTGTAAGGGCTTTTGTTAATATACACTATTGAATAGTGGTGCATCTACTTAGTATCTGCTTTTTCTTCCTCTGCATCTGTGCATCTTACAG
Seq C2 exon
CTGTACAATATGTTTCCCATCCTTGGACCCTTCCTGAAGGACAACAAAAGTTTTCTTGAGAATGTAAAAGAAGTCAATGATTTTATCAAGGTTACTTTCACAAAATATCTCCAAGTCCTGGACAAAAATGACCAGAGGAGCTTCATCGACGCTTTTCTTGTCAAACAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690:ENSGALT00000026937:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCCCCTTGAGATGACTC
R:
TGTTTGACAAGAAAAGCGTCGA
Band lengths:
328-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]