GgaINT0083133 @ galGal4
Intron Retention
Gene
ENSGALG00000011537 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr3:42608022-42611637:+
Coord C1 exon
chr3:42608022-42608177
Coord A exon
chr3:42608178-42611464
Coord C2 exon
chr3:42611465-42611637
Length
3287 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGTTTTTTACTTTTTCATAGCTG
3' ss Score
6.7
Exon sequences
Seq C1 exon
CGAAAAGGTCTTTTAGTTGCATGCCTATGTCATGACCTGGATCACAGAGGTTACAGCAACAGCTATCTTCAGAAGTTTGATCACCCTCTAGCTGCTCTCTATTCCACATCAACGATGGAACAGCACCACTTCTCACAAACTGTGTCCATCCTGCAG
Seq A exon
GTAGGGTTATTGTATCTTCTGTGCAATAGTGTCCAGTGGTGAATATACGAGTCACATCATCACCAAGTAGATTCTATAAAGCATGCTTAATTTACTTTCTGGATTGTAGTGCTCATCTGGAAGTATGGACAAGATTTGCCTTGATTTATTACAGCAATCTAAGGTCCCAAGCATTCATTATTAGCAAGCCAAGCATTCAGTAATAGTGCAAAACATAGCTTTTCCAAATTCTTGATGTTACAAAAATACTGTGCATTTTAAGGTTTTTATTAATGATCTTCCTTTGGATGTGTTAGCTTCTGGGTCAGGGAGGATTTCCCTTAAGACCGTACGCAATGGGGACTTAAAAAATGAAAATAAGTTTCTCACTTAGTTATGTATTTTCAGTAGAATGTGCTTCAACAATGTCTTCAACTGTCCTGAAATTCTGAATAAAAATTAAAGGCCTGACAAATGTTTGCATGAGAAGCTTGAAAACCTGCTGTAATAAATTTCATAAACATTAAATATGTGGCATGAAGTGTGCATAAATTCTTTACCTAGAAGCGAGTGGTAATTTTGCACGCATGAAAAGTTTAAGCCTTTTTCATTATGTTATGATATATTCTTTTGTTCTTCAGCAATTGGGAAAAAAGACCAATAAGGTAATATTCTGTGATAGTTCAACTATAAGGTAAAGTATCTGCATGTTTAATTAACAGAAAGCTAGAAGAAAGCATGCAGATACATTTTGGGAAATCAAAGTGTGTTGCTGATGCACAGATATTTTCTCATCGGTGAAAAAACTGTTCACGTTCAATTAGAGGACAGAACTCTCACCTATGAAACAGTTGCCAGTGCCTAATGTACTTGTGCTAGCTGTTTTTCCTTTTCTGTGCACACACCCAATGCATAGCCTAGGCATGCTACTGTACCACTAATTCATTGTTAACTTCTCTTTCTTTCTGATCTTTCAGGGGGAAGATATTTATTTTCTTAAATACCTAATCACCTTTTAGGATTATACGTATTCTGTATTGTATTCAGAAACACATCTTATTATGGTTTTAGGTGAAATATACATTTCATCAGGGAATGGAAGCTTTATCTCTGAATATTCCTCCATGTGGGAGGGTGTAATTGAATCCTTCAGTGGTGGTATGGCATTAGTTTTTTAGTATTCATTCTTCATGTGTTTGTGCACAGTAGTCCTCAGTCCAGTAACACTTCTCTGTCACACTGTGGCTATATGAAACAGAATTCAGTCTTTCTTTAATGAACATTTTGCATTTTTACTGCAGAAATGCAGTGAAAGTTGCATTTACCAAAAAGGTGGGGAACCTTTTGCCTCTCTGTTGCCTCTTATCCTTGTCTGTCACAGCCAATTGAGTGTGAGGAAAGGCATCTAAGTAGTCAGGTCTCTAGAGAAGATTCAGATACTGACTGCCCAAGTGCTCACGGGTGATGTTTAGCAGCACAGGCGTGGTAGATCAGCCTTTTGGATTAGTTTTGATATTGAATCAAATAGCCTTTCTGTTTATTTGCAGAACTGTTACAGAAGAAAGAAAAAAAACTAAAACAACAACAACAACAAAAAAAAAAAAGAAAGAAAAAAAAAAGAAAGAAAGCCAAGTAGTCTTTCAGGATTTATCTCAATGAGTTTTAATTTTATATTAATAACCTGCAGTAGTTTTCACTTGAACCTTTATAGCCACTTTTTTCATTCACTTGTAATTCTGCTTTATGCCATAACTTACAAATATGGAAGATTCCATTCACTAGCTCTTGCTTAATGGGGAAGGAATAAAATCTTAGGCACTATACCTTATATGTACTATGCAAAAGCCTATGTAACATGCTCAGAACCAGCAGCTTTCATTGGTACTTAATGACATCAGTTTTTTTTCTAGTACAGTGAACAGGAGCTGTCACAGTGGTCTTCATCGTGTTGCAATTTCTAAAGCCTAGATAGAAGTCATAGCTCCAAATCTAGCATAATTTAAGTTTTGGGACACATAACTTATTCTTATGGATTAGGTAGCACATCTGGGGAGGAAAACCCCAAAACCCCAAATCGTGAAAATAAATAATAGTCATTTCCTGGTCCCAAGCTGTTGATGATGGGTTAACATGTTCTGAATTATTTTTTTAACTTTGTGTACTGTGGCTCAGGCAGCTGTCAAAGGAGCATTAAGAAAGACAGATAGACTGCATTTTCTATTTGTTATTCACAACAAATGTTCTTGTCCAAGTAAACAATGTTGGGAAACGATATTTACGTTCTGAATGGTGAAAGAAACCAAGTGTATTTGTACCACAGAGGAATTATTTTGAACAAATTATGTAAATGCTTGACAAGTCGGGGAAACTTTTGATGAGCTTCAACTCAAATGCCAATTAAATGTCAAAACACAACTGCATTTGATATATTTTGATCATATTTTCTATTTATGAATGTCCACACCTTGACATGGCTGGCTTATTCTTTTATATTCATCTGTTTCCTCTCAACAGTAGGGAAGACTTTTGACAAGTTCCTTTCAAAAGCTTAGAAAAAGTGAACAGTGTTGACTTGACTTAAAATGTGATATGAAGCTGTGAACAGTCACGGTACATGGATATTGTCAGTTAAAAGTGCAATAATATATGGTGGAAACTGAAAAGGAATGACAGTGGTATGTTGCCATAGTGGAAAATTTTGTCTTTAGTTTATAAGTCAGTCAACTTAAGGTTGAATAAAGTAGCTCTTTTCCTCTGAACATTCATATACATTAATGTACTGTAATTAAGCTTACTTCTAAAGACAACATTTTATCAGTAAATGCAACAGTTGCAGGCACGTTTCATTTGCAACATTCTGAAACCAAGATAATCTTAGAGCATTAACTTGGCTATTTCCTTGTCTGTATTACTTGTTATGCAATATCAAAAATGGTTCTTCAAAGTGAATCAGGCATTTAGTTTACCAGCTTGACAGTGAAGTACTCTGGATCAGGATTAAATCACAAGTTCCCAGGCTTATACTGTTAGGAATTACTGTACATACAGTGCTTATAAATCGTAGCAGAAAAAACTAGCATTTCTCTCTATTAATGTCTTCAGCCTTCAGAAGGAGCAGTCCCAAAACCAAATCAGTGGTTTAGTCGTGGTTTCATGAGAACATTTAAAAAGCAAAGATAAAAATGGGAATTTGCAACAAAAATTGTTACTGGGCTGTAAAACTGTTATAACCTGTCTGGTGAAGTAAAGTCTGAAATCATCTCAGAATTAGAGCTTGTGCTTTTTATTGGTTTTTTACTTTTTCATAG
Seq C2 exon
CTGGAAGGGCACAATGTCTTCTCCAATTTGAGCTCCAGTGAATATGAGCAAGTCCTTGAGATTATTCGGAAAGCCATCATCGCCACAGACCTTGCCCTGTATTTTGGAAATAGAAAACAGCTTGAAGAGCTGCATCAGGCAGGAGCATTAAACCTTAAGAACCAAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537:ENSGALT00000018810:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(21.6=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(24.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]