GgaINT0083451 @ galGal3
Intron Retention
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111598079-111598761:+
Coord C1 exon
chr3:111598079-111598205
Coord A exon
chr3:111598206-111598600
Coord C2 exon
chr3:111598601-111598761
Length
395 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTCTTTTGTTCATTGTGTAGGAA
3' ss Score
8.27
Exon sequences
Seq C1 exon
AACTGGAAAGTGATGCGAAGGTTTACTCTCACAACCTTACGAGATTTTGGGATGGGAAAAAGAGCCATTGAGGACCGCATTGTGGAGGAGTATGGCTATCTGATAGACAACGTTGGGTCACAAGAAG
Seq A exon
GTGGGTAGATGAGACGTTCTCCAGATCTCTAAGGTTTTGTTCAAATTATCATAGAATCATGGAATGGTTTGGATTGGAAGAGATCTTTAAGATCATCCAGTTCCAACCTCCCTGCTGTAGGAAGGGACACCTCCCACTAGACCAGGTTGCTCACAGCCCCATCCAGCCCAGGTACCCTGTGGCTTGACAATAACCTTCTCAAGTTCTTCAGCTGTTTACTTTGGACTAAATCAATTTGATTAATTTGGCTCCTCTGGCTTTTTTGTTGATTTGGCATGGTTATCTGGCAATAAACGCTAATCACTACTAATTAAAATAAATAAATAGCAATAATTAGTGTTTAACTTATATAGTCTCTTCCCGCAATGTAATGTGTTCTTTTGTTCATTGTGTAG
Seq C2 exon
GAAAACCCTTTGATGCTAGTAAAATAATTAATGCAGCAGTTGCTAACATAATTGTGTCAATATTACTTGGAAAACGATTTGACTACAAAGACTCCAGATTTATAAGGCTTCAACATCTGACCAATGAAAGCATGAGGCTTGCAGGGAAACCTTTGGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812:ENSGALT00000026936:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAAAGTGATGCGAAGGT
R:
CGTAACCAAAGGTTTCCCTGC
Band lengths:
287-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]