GgaINT0083453 @ galGal3
Intron Retention
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111599961-111600880:+
Coord C1 exon
chr3:111599961-111600134
Coord A exon
chr3:111600135-111600738
Coord C2 exon
chr3:111600739-111600880
Length
604 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
ACCTCATCCACTTCTTTCAGGAG
3' ss Score
9.1
Exon sequences
Seq C1 exon
ATGTATAACATCTTCCCATACCTTGGATTCCTCCTGAGGGCCAACAAGACTCTTCTCAAAAACAGAGACGAATTCCATGCTTATGTAAAAGCTACTTTTCTAGAAAATCTCAAAACTCTGGACAAAAATGATCAAAGAAGTTTCATTGATGCTTTCCTTGTTAAACAGCAGGAG
Seq A exon
GTAACTGAACCTTTTTTCTTCAAACTTTTATGTTTTTTGAAGTCATCCACAATTTCCTTTGAGACCTAATAACCATAGCTTGCTTTCTTTGGCAATTTATCTTCAACCAAACAGCTGAAGAGTCAGTGGGTGTGAATGGATATTTCATTCTGAATGAATGAATATTTCATTCCGTTGCAGTTCTGACCCCTTTTAATCAGCAAATATTTCTTCCTTTAAGCTTTTCTCCAGAGTAGTTGGGTACATTTACCAAGGCTACACCTTCCCATATGCTCTGTCCTAGTCCTTCTGACTCTTCCAAAAACATAAAGCATTACAGAGCAAAAGAGCTCCTTGGGCTCTACTGGGATCCTTTTTTGGTGGCTGTGATACATCTTAGTTACCTCTCACATAGATAAACCAACTCTCTTTGAAGCTGGCCTCATTATGGGCAGAGGTTATGCAAAACAAAACCTCTGGCAACACTTCTACCTGGGTATAAACCCAAAGCTCCTTGTCTTTTATATTAAATACAGAATTTATTAGCAAATATTTAGCTGTCTGTATTGCATTTTCCATGGAAAGGTTTAAGTTTTTACCCTTCTACCTCATCCACTTCTTTCAG
Seq C2 exon
GAGAAATCCACTACCAATGGGTATTTCCATAATGGTAACCTGCTAAGCTTGGTGAGCAACTTGTTCACTGCTGGTGTTGAGACCATTTCCACCACACTAAACTGGAGCTTTCTGCTGATGCTAAAGTACCCTGAAATTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812:ENSGALT00000026936:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTATAACATCTTCCCATACCTTGG
R:
TTTCAGGGTACTTTAGCATCAGCA
Band lengths:
310-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]