GgaINT0085343 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52480726-52481318:+
Coord C1 exon
chr3:52480726-52480794
Coord A exon
chr3:52480795-52481192
Coord C2 exon
chr3:52481193-52481318
Length
398 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AGACTGATGTTTTTTCACAGATG
3' ss Score
7.92
Exon sequences
Seq C1 exon
GACTTGAGTTGCCTCTTTGAGCTATACTTGGAGCCTCTTCAAAATGAAACCTTCCTTACACAAGATGAG
Seq A exon
GTGAGGGAATTACTGAAAGACGTTCTTTCCATTCTTTCATGAGTTAGGACCTTGTGTGGTTTCTTTTTGTTTGTTTGCTTTTCACTGCTAAGAGCACTACATAAAAGGAAAGCAATGAATATAACAATAGGATTTACACCTGTGTGTGTCTTTCTTTCTGGTTCACACATCACTCACTTTTAAAAAATTGTAGTTTTACTTCTGATTTAACTGCTAAGAAATCTCTGCTTTTTTTTATAATGACTTTTAAATAAAATGCATTTGAAAAATATTAATGAATATGTTACTGGTCTATGCGACCTCTTTTGGTGTGCCATATCTCCTTAGTGGACTATTTTCTCAAGACCAAAGGTAGCTGTATGGAGTGCTGTATGACATAGACTGATGTTTTTTCACAG
Seq C2 exon
ATGGAGTCCTTGTTCGGCAGTCTGCCAGAAATGCTGGATTTTCAGAAGGTGTTTTTGGAGACCCTTGAAGATGGAATATCTTCTTCCTCGGACTTTAACACACTGGAGACACCGTCTCAGTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(11.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAGTTGCCTCTTTGAGCT
R:
CCGGAACTGAGACGGTGTCT
Band lengths:
194-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]