GgaINT0085344 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52481193-52482722:+
Coord C1 exon
chr3:52481193-52481318
Coord A exon
chr3:52481319-52482613
Coord C2 exon
chr3:52482614-52482722
Length
1295 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGAT
5' ss Score
3
3' ss Seq
TTTGATTGTGTTGATTTCAGAAA
3' ss Score
7.37
Exon sequences
Seq C1 exon
ATGGAGTCCTTGTTCGGCAGTCTGCCAGAAATGCTGGATTTTCAGAAGGTGTTTTTGGAGACCCTTGAAGATGGAATATCTTCTTCCTCGGACTTTAACACACTGGAGACACCGTCTCAGTTCCGG
Seq A exon
GTAGATATGTGGTTATTTAATAACTTACAATTTGCCTGGAAATGTTTGTGGACATCTGGCTTTAAAGTTCTGTTTCATATGGTTGCTTTTATGTTTGAACCTATTAGCAGTGGAAGTGTGGAGTGCTATTCTCCATGGTTTTTCCTCTTTCCCATGGCAAAGGATGTAACACAGACAATGCAGAGTAGACTTTGAGTATGCTATGAAGTAGCACTGCTTACACAAAGTGTAACTTCTGTAGAAAGGTTATTGTTGCTATGCTGAATTCTGCCCTGCCTTGTGCTCCCTGCTATGTCCAGTTCACCTGCTGCAGACTGGGAGCTTTTCCTTTTAAATGCAGCATGAGCTTCTCATGTTGTGAGGTCTAACAGGGTCACATCTATGAAGTGTAGATGACTGTAGTTTGTGCCCTCGCTGTGCTGTCGTCTTCCCAGTGGCTCCACACAGTGCTTGACATAACTGAGGAACAAGGCTCCCCTGAGATGTTGGCGCTGTCACAAACCTAGGAGAGACTGCTGGCAGGTCTCCTTGACCCTTGTTTTTTGTGGAGCAAACACTGATCAAAAAGATGGGAGAAGGTTGCTCTCTTTCTCCTCCTCCTCCTCCACCTCTTCCTCCATCACTACTTCTCTTTCTTATCTTTGCTGTGAGAAGCATTTCTCTAAAAAGATCTCCCTCGTGATTCAGTCCCTCCCACATCTTCCCATCCTCCTCTTCATCCAGGAAAAGCAGAGGTGCCCTGTAATTATCACCTGCCCAAAAGAAGGAAAACAGTTGGAAAGCAATCCTGTGTTTGTTTTACACTCTCTCTTCTGGTTTTGGCACTTTCATAACCCACTTCCAAGTGCTCAGGTGTTTTACCAGCACAATGTACCTGTTACATGTCTATAGTTTTTTGCTACTGTTCTGTCTCAAAGATACAGTAAGACAATGCCTACAGTGGTGGTGTTTGCTCAGGGAGAACTGAGAAAACTGCAGGCTTTGCCTAATTAGGCTGAAGTCTACAGAAACAGAGAAGCATCATGGAACTACTACGGATAATGTATTCATGTAATATAGTTTATATATATATGTATATATACACACACACATGCATGTATCTTTATATGTGTATATAATATACACACATATACATATATATATATGTGTGTGTATATATGTGTGTGTGTGTGTATATATATACACTCTAAGATACAAATAGAAAGACAGCAGATACACCATTGAGTCTCTGTGTTATGTACCTGAATGTTTATTTCAGGTTCTGGTAATAAATATTTTGATTGTGTTGATTTCAG
Seq C2 exon
AAATTGCTGTTTTCCCTGGGAGGATCGTTTCTGTATTATGCTGACCACTTCAAACTGTACAGTGGCTTTTGTGCCAACCACATCAAAGTTCAGAAAGTTCTTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTTGTTCGGCAGTCTG
R:
TCTCTCAAGAACTTTCTGAACTTTGA
Band lengths:
231-1526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]