GgaINT0085346 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52483341-52485005:+
Coord C1 exon
chr3:52483341-52483520
Coord A exon
chr3:52483521-52484886
Coord C2 exon
chr3:52484887-52485005
Length
1366 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GAATTTCTTAAACTTTATAGAAG
3' ss Score
2.79
Exon sequences
Seq C1 exon
CCAAAACAGACAGTGCATTTAAGGCCTTCTTGGATGCTCGCAATCCTACAAAGCAACACTCCTCTACGCTGGAGTCGTATCTCATAAAGCCTGTTCAGAGAGTGCTGAAATATCCTCTGCTTTTGAAAGAGCTGGTGTCCCTGACAGACAACGAGAGTGAGGAGCACTACCATTTGACAG
Seq A exon
GTAACTTCTTGGATTCTTCTACAGGAATGAATATGAGTTAAGTTTGGTTTCCAGCCTCTTCTGAAGATGCAGGTAGCCGTTCTGTTAGATAGCACAGAACTTGTCGAAACTTAGAGAATTCCCTCTCTCTCTTTAAAAATAGGAAGTAGCTTTATTGTGCTTTTAGCAAAAAATCCCTCTTGGTATGTCGAAATCTCCTTGAAAAATAGATACAACCAGAATTTGTCATGACAAACAGGGCCGGGGACTTTCCCCTTAATCCTTGTGACAGAAGCTCATTATGTTGTTTTTCCACTTGGAAATAACTTACTGTGGTTATTATTCAGTTCTTGAAATGTGTCAAATTTTAACAGCACTGCAGAAGGAAATTTTAGTTGTTTGAGGCTTGGCTGTGATTCCTGCTTGTGTGGAAGAGTTCTGTGTCAAAACAGTCTTCACACACAGAAATACGTGTCTGCCCTAATAGATATATATTAGATTCTTTTTCTAGGCTCAGATGCTTGGGACTTCACCCTGACAAATTTCAGTTCATGTCTGTCAGCACCTTAAGGATGAAAGTCCAGAGATGAATTTCATGGATCGATTTTCATTTTAACAAAATAGATTCAGGCCAAATGCCCTGTCAGCAAAAAGTCACAAGGCCATTACTGACTTCAAAGGGAGCTTCTAATACTGTATTTTGCCATGACAACCAGGTTGAGGATGACTTGCTTGTAGGTCAAGGCTGAATGCCAAACTGTTAAAAGACTACACCATTAAGAGGTGGCAGAACTAGGGTAATTAAGTGCCCTTATCCAACTCCTTTGTGTATGAACAATAAAGTAATGCAATCTAGTGTCATTCTTTGCCTAGAAAACAAAATTTAAATAAAACTTGACTGCCAGCATTTAATTTCATAAATAACAACCAGTCATGACTTCGTGTAGCCTAGCACTATATTTATTTATTTTTTGTGATGAGCCAAATTCAATTATTTTCCATCAAAGTTCATTAGATTATTAATTTATTTATTCTAGTATGGGTGTTTATGACTCTGGATAGCCTAGTGGCCCCCTTTATACAAGATGCAAAACCTAACTCTGTTTCTTGTCATATTGTTATGAACCCCAAATACATGAATATTCATCACTAGAACGCTTACTGCTATCTGCTCAGGCACTTAAGAGATCAGATAAGCATTTTTCACTTTGATCAGGAAGAATGCTTTCTGCAGCTGCTTTGAGAAGCACTGATCTGAATTCTGATCAACAAACTTTGGGAATGCTACATGATTTTGGCTGCCTCAAGTAGAATTCTATGCAAAATGTCATGGTTAGAAAATACAATTGAATTACATAGCTGTCTATGAATTTCTTAAACTTTATAG
Seq C2 exon
AAGCGCTGAAGGCAATGGAAAAAGTAGCAAGTCACATCAATGAGATGCAGAAGATATATGAAGATTATGGCACTGTATTTGATCAACTGGTTGCAGATCAAAGTGGAACAGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(31.6=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACAGTGCATTTAAGGCCT
R:
CTCCTTCTCTGTTCCACTTTGA
Band lengths:
294-1660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]