GgaINT0087354 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30633726-30634755:-
Coord C1 exon
chr3:30634600-30634755
Coord A exon
chr3:30633909-30634599
Coord C2 exon
chr3:30633726-30633908
Length
691 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
GATTCTGACTTACTTCACAGGTG
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTAACAACATTAAATCACAAATATTTCCGTACACATCTAGAAGATAGTCTTTCACTGGGACGATCACTTGTGATTGAAGATATAGGTGAAGAGTTGGATCCAGTTCTTGATAATATATTAGAAAAGAATTTCATTAAATCTGGAACTTCTTTTAAG
Seq A exon
GTTAGTAATTGAAGAAAAGAGGTGGAATAGGTTAATTTTGTGATGAATTATATTTTTTCTGTTTATTGCAAATCTCTGCTAAATTAGGTAAACTTTTGTACTCAGGAGGGTAATGTTGAAGAATCAAACTAAACTAATAAAATAGACAGAGTCTCAGCTGAGTAATCAACTAATGAATCTAGAATTTAATTACTGCAGTTAATTCTGAGGTTTTCAAGCTAGAACTAGTTAGGTTTATCCTGCTGAATGCTTACAATACTTTCTATTCATTTTCAAGCAATTTCATTTTATACCATGTAATAGAATTATATAGGTTTGAAAAGCTGTCTCTGTTCTGAGTGTGGAGTATTGGTGGTAGTGACAACAGACAACATAATATTTTATTGGAAAAGACCTATTTTCTAAAGAAACAAGCCCCAGATTTAAAGCTTTAATAATAGTATTAAATATACTCCCAAACTTGAAAAATCATGCAGGTTTCTGACCTTCATTTAGATAAATAAATCACTGTCAAATTCTAAAAGCATCCTCCTTTCACATATTCTGAAGTAAAATGACTGTACATGCTATATATTTTTTTCCAAACTATCTTCTTTAACTGTATGAGATATGACAGATTTTAGAAAAAAATTGCAGATGATAATTGATGAAATTATTCATTTTATCAATATGATTCTGACTTACTTCACAG
Seq C2 exon
GTGAAAGTTGGTGATAAGGAAGTTGATGTAATGAATACCTTCAGACTATACATTACTACAAAGCTACCCAATCCTGCTTTCACACCTGAAATTAATGCAAAAACATCAATTATTGATTTTACTGTGACAATGAAAGGACTTGAGAATCAGTTACTGAGAAGAGTAATTCTTACTGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.1=100)
A:
NA
C2:
PF127812=AAA_9=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACAAATATTTCCGTACACATCT
R:
TTACTCTTCTCAGTAACTGATTCTCA
Band lengths:
310-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]