GgaINT0088315 @ galGal3
Intron Retention
Gene
ENSGALG00000016330 | ANGPT2
Description
NA
Coordinates
chr3:91426670-91429908:+
Coord C1 exon
chr3:91426670-91426825
Coord A exon
chr3:91426826-91429786
Coord C2 exon
chr3:91429787-91429908
Length
2961 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTTTTATATATTTTATTTAGGTA
3' ss Score
8.97
Exon sequences
Seq C1 exon
CTTGAGAATTACATCCAAGACAGTATGAAGAAAGAAATGGTAGAGATCCAGCAAACTGCAGTGCAGAACCAGACTGCAGTAATGATTGAAATAGGCACAAACTTACTAAATCAAACAGCTGAGCAGACCCGCAAATTAACAGATGTTGAAGCACAA
Seq A exon
GTAAGTAAAGAATTTCAACCTAAAAATGCTTCTGCTTCCCAAACGCCTGTAACCACATTTAACACAGTTTAGTGTTACACTGTGCAGTTCAACAGTTAAAAGTCAATCATAATGTAAAAAAGAAAGTATCCTGTATGGATACATGTTTGTCTGTACACATGGAAATGCTGCTGTGTGTTTGAGCATCATGACTGTGGTTACATTGTCTGGACTAACAGGTTATTCTTCCTGGGTATTGTTGGTTATTGCCAAACTCTAGGCCTGCAACTGTGCTTAAGGAGTCTCGGTACCATTCTAACATTGTTTTTCTGATCCTTTGAAAATCACAATCACATTCCAATAAAAGGTCCTTGTTTTCCCGGTACATCTGTTACTTCTTCTCCTATGTCCTAACAGTAATTAGGAAGGATACACTCATCTCAGAGAGAGATATGTGTGGAGTTGGTGATGCTGTTGGTGATGTTGTGGAGGTATGTGTGGAGATGTGATGTTGGTGATGTTGTCCAAGTAGCTGGGAAAAGCCCACAGCACATGAATCATAGATTCATAGAATGGCCTAGGCTGGAAAAGACCTCAAAGATCATCTAGTTTCAACCCCCCTGCCACAGGCAGGGTTGCCAACCACTAGATCAGGCTGCCCAGAGCCACATCCAGCCCGGCCTTGAATGCATCCAGGGGCAGGGCATCCACAACCTCCTTGGGCAACCTGTTCCAGGAAATTTTTGTGCAGTTGCAGAGTCAGCGCTGACACAAGCAGGGAGCTGGAGGGAAATCTGTAGGAAACATGGCTTCCTTAAATTTGTGGGTGACAAAAGTGATTTGTTTGTTTGTTTCTTTGTGCCATAACAGTAATCCATTAGTGTATCCATACTTTTTTTTTCTTTTTTTTCCTTTTTTTTTCCAAAAATGCTCTAACCTTAAACCTCATGGCATCTCTTTTCATTAAGCTTTGAAAATATTTCATCTTCTCCTTCATATGCCAGGAATTGGACATGATGATCCTTGTGGGTCCCATCCAACACGGGATCTTCTCTGATTATCATCAACAGCTCTACCCAGCTTAAGAAAACATGAATATTTGGTAACATGAAAGACTTCTATTATGGAAGGATTTGGAGATTGTCTAGCAAGACAATTGTTACATCCATCTTCAAAGATAACATTCTTTAAACTCCTACTGTAGGTTCAAGCATACACTTTGGTAACGGTATGCTTTTATACAACTCTTGTTGTATAGCTCTTCAGTATTCACCTCTCCCCACTAGATCTTAGTAAACAGGGTTCTTTCCCACTCTGCCTTTGTTCCATTTACTGAACTGTTTTCTTTGAATTTTCTTTTAGGTTTCAAAAAAAAAAAAAAAAAACTTATCAATAAAAAATGTGATTTTTAAAGAGTGTTTTCACAGATGCTATGAATGAAGGAACAGATCATTTCCAGATCATTCCCAGCACAATGCACTATACTATTCCTGTTTATGAGAGTGATAAACTAACCAACCTGAGATGAATTAAGAAAAAAATAATTAGGTGGCAGCTACTGGGAAACTATATTAAAGTAAACTTGCCTACAGTATGTTAATCTCTAAACAATTTCAAACAACAAAAAAACAAAAGATTTCTCTTTAATTGAAAAGTATTAACTACAGTAAGACATTGTGTGAAATAGAATGCAAGTTTTTAATATGTTCTACTATTTAAAGATAAGGACAAATCTCATCAGTGTAGAACGGTATGCATTTGTAGTTTTGCTAACAATCCCCAGACAAGTGAATATAGTATGTAGTACATAATTTATTATGTAACTAACACATAAAACCTAAATTCCTTGCTAGGCATTTTACTATCTGTAGAGTTCATCCACTGAATACAAGTATACTTTTAAACCTAAAATAAGCCGTTGTGAATTCTTTGATAAACTGGTAGTTCATAGCTCACAGATGTGAATTCTAACTGCAGCCCAGTATTTTGCACATGTTGAGAGAATGTATTTATTCACAGTAATGACTTGATGGAAATTATTCAGTTATTTTCTGCTTAGAGGAAGAAAATCATCACTGACTTTCCTTCTCTGCTTGGAATTACTGGTGACTGGGTGAAGGTCTTAATTAACAACATAAGGAAATTAACCGAACAATTGCTCTCTCAAGGACACTTTTTTTGGCAATAATTTTCAGTTACAGTTAATTGTGAAATCATGTCCTGAATGACACTTTGACATGAAGGACATGAGTAATCAATTCTTCCTGCCAATGAAAGCCAAATTCTACTGAATTAAAAAAAGCTGTTCTAAAACAATAAGAAAATATTTCTAGAAAACATGCCTCAAAGTAATGCAATCCAGGACAAAACAGAAGCACTTGCCATGTTTCCCAATTTCTTCATTGAAAGACACAAATAAATGTAGACAGTAAACAATCCATATACAAAAGTTGATATTAAAATGCAAGGAATTAGTTGACAAATGAGGCCACATGCTAAGCACCTTAGAATATAATTTAGGATTAAGGAAAATAGCTACGAGTGAACTAATGGTTTTAGAGGACTGGGCCAAGATTTCCACTAGTGAGAGATACGCAAAGTGCTTTCTTTCTACAATAGGTGGAGAAAACAACTCTTATTATTTTTTGATTAACAACCATAACAGTTCCAGTAATGAAACAAGAGCATTAAAACACAACGGAAGGTATAACAGTAAAACTAACGTAAACTAACTCTCAATCATTGGTCAGAAATGCAGCATATTACTGAAACTCTCAGTGATAAATGGTAGCAGAACAACAAAATTAGTAGAAACTTGTGTATTCTTCTTCATTCTAATTCTGAGAGCATTTGTACCTAAATTAAATGTTCAAAAATAACTTTTGCATTATAAGTTTACACAAGACTTCACAATATAAAGAAATTACAATTGGTTTAAAAGAGGTATTGTGATTTTCAAATACTTTTATATATTTTATTTAG
Seq C2 exon
GTACTAAACCAGACAACCAGACTTGAACTTCAGCTTTTGGAACATTCCCTTTCAACAAATAAATTAGAAAGACAGATTTCTGTTCAGACCAACGAGATAACTAAATTACAAGAAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016330:ENSGALT00000026341:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041569=IncA=FE(19.9=100),PF0497710=DivIC=PU(63.8=73.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]