GgaINT0090606 @ galGal3
Intron Retention
Gene
ENSGALG00000016195 | COL22A1
Description
NA
Coordinates
chr2:150223657-150224677:-
Coord C1 exon
chr2:150224642-150224677
Coord A exon
chr2:150223711-150224641
Coord C2 exon
chr2:150223657-150223710
Length
931 bp
Sequences
Splice sites
5' ss Seq
TTGGTACAG
5' ss Score
0.92
3' ss Seq
GTTTGTTCTCTCCCTGCCAGGGT
3' ss Score
9.69
Exon sequences
Seq C1 exon
GGCCCTGTTGGACCCCCAGGAGACAAAGGATCATTG
Seq A exon
GTACAGTATGTCTTTCTCACTACACCCAGATTTTGTGGGGAGGGGGCAAACATGAATTTTGTTACTAACAGTGATTTCATAAAATCATCATTAATTTTTTGGTGCTGTATTTTTCCAAGAGATGGTAGAGTCATATGTTGGCTGGTTAGCCAAATGAGACTTCGGATGTGCATTACCACTACGTGTTTGCTGTAGTGGGTTATGAGAAAAAGAGTTATCCGGACTCCTGTTCTGGTGACAACTTTTCCTCACACCTCAGAACAGTCCCACAGGAGGAAAGAAAAAGTATGTCACGGCACACAATTCAAGGCATGTTGTTATGCCTTATAATCAAAGCCTCAAATGTATAAATATTTTTCAGTATTTTTCTTGCTTAAGGCTTACAGAAAACCCTGCATTTAAGTGTTAACCAAACACACTTATTTCCTTCATGGTTTACAAAGTTGCAGTCTATAGGTGTGAAGCTAATAGCTGTTTATTATAGTTTCACTATATGCTGGTATGCATTTCCAGTGGTATAGCCCAGTCATGGTGTGTACTAGTTTGACACCAAGGAATTGAATGTTCTTTTCTCCTCCACAGTCCCATGATCAGTTGTATTTTCTCTCTGTTCATATACTTGCCTTCTTATAAAGAGTCATTATTACCTTTCCAGTTGAGGTATGTGAGATTTGACTGGAGTGATGCACTTAAAATTCCTGGATGCACAGGAACAACTGATGCTGTGATAGTTCAATGTGGAATTACTTTTTATTTTAATCTCTTTTGAAAGCGTTTAACTGTTAGCATTGTGGGTTGTTGTTGGTGATGTTTGTTTTTTTCTTTTTTTTTTTTTCCCAAGTAATTATTGAGTTGAGTGTTTTTTTCTCTTCAGCTAAGGATAATCTGGCAAGTACTGCTCATGTTTCTGTGTTTGTTCTCTCCCTGCCAG
Seq C2 exon
GGTCCTCGTGGTGTACCTGGTATCCCTGGACCACAGGGGCCTCCTGGCCAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016195:ENSGALT00000026109:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.3=100)
A:
NA
C2:
PF0139113=Collagen=FE(29.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]