GgaINT0091529 @ galGal4
Intron Retention
Gene
ENSGALG00000012739 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr2:62793923-62798282:-
Coord C1 exon
chr2:62797765-62798282
Coord A exon
chr2:62794997-62797764
Coord C2 exon
chr2:62793923-62794996
Length
2768 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TCCCTCTCATTCTCTCCCAGAGC
3' ss Score
10.35
Exon sequences
Seq C1 exon
GAGAGAAGCAAAGATTGGGCTGTGATCGGTCAGGGTTTGATGCGGAGGAATCTGACGGTGCAGATGAAGATGAAAATGACAACGAAGATGATGATGAAGACAGCCAAGCTGAGTCAGTCCTATCCACAACCCCCTCGGTGACAGCCAGCCCCCAGCATCACCCCTCTCGACATGGCCTGCAGGATGCCACAAGTGCTGATGAGGACAGCAGACTGCCGGACTGCTTTGGCGGGATTCACACGGACTCTATGGATGGTCTCCCAAAAGCGCTGCTCACAAAGATGACTGTCCTTAGTGCTGCGCAGTCGGTTAGCAGGACCTCCAGGTCACCAGCAGAGTTTACCCACCAGGAAGAAAATGAGGACAAAGCCCAGGAGAGGGGAGCTGGTCCCCACAGTGCAAGTAGTGCACTGGTAGACTCTGCTCCTGCATCTCCAGGTCGCCATATGTCCGTGGATTACCCCGATCCGGAAACAACTGTGGCCCACTCCTCCGTAGCAACCACAATTCTTACGAAG
Seq A exon
GTAGGAGTCCAGTTCTGGGGGTGAGAGTGTTAGTTAAAGATCATGTTGGTGATTTTTCAGAGGGTCTTGCCTTTCATTCTTTGAGTTGTTGGCTCATGCTTTAAAAGAGTTGAAAATAGCTGAAGCACGAATGTGTAGGACTGTAGAAACAACAGTGTTGTAGTGGCACTACTTTTTAAAATTCTGTAAATCTGTCTGCATCATTTCTGAAAGGTTTAATTGGAATGTGGTCATTTCAGATAAAGTTTGGAGCTAGTAGAATGTATTGCAAATGAGATTGGATATTACAGATACATAGAATGGACATATGGGGGGGGGGGCAATGAAGTTTTTAGTGGAAAGTGATATAATTCAGAAGTCATTTTACTCTGGAATAAATACAACATTGGTAACTTCCAAGGAAGACTAATCTAGTCCCAAAGGTTTTTGCCTTACTGCTGTAAAAAAAATTGTGCAGTTGCTTCTCTCTCCCCAAATATGTTCAGTGGTAGATTTACAATGAGCACCATATGTTCAAGGAATCTAGGGATTGCCTTTGCAGAATAACAAAAGGAGACAGAAGCACAGATCTGAGACCTGAGTTCCCACTGCTCTCAGTTTTTCTCCAAATGAAGGAGCATTTTGATAAGAAAAGGATCAGTTTTGCCCGTGCCTATTCTGGGTAGACAGACATGTGGAAAGATGAAGTCAGTCTATGTGCAAGATTGCAGGTGTGTTCAGTAACACTTGCAACCAGTGCTTATAAAGCTACAGGGAGCCAGCAGGTGTTAAGTGTTTTACAGTCCAGCAGTATTTTAATGGAATTTAATGGGGACAGCATAAATCATATACTTCATTGACCCTAATGATATCTCTTGAAAGTTTTGAATTCTTACTGTGACCATGAGGGCAGTAGGGCTTCCCAGAGTAATGCCCAGAAAAATACGATGCAAAATGTTATATAGCTTAAGTAGAGGAGTAATTACCTCCCTCTCTCCCTCTCTGTGATGACTTCAGCATTTACAAACCATAGATGCATGCAGTTACAGAAAAATAAGAGGCAGGAAATTTTCAGTCAGAAACAGTAAGGAAAGATTTGATTATAGTTTAAGTACTTAGTGGCTCATTCTTTGAAAATCTCTACTACTGCATTTGTTTTTTAAAAGAGTTAAGGTAGTGAACTGTTGGCGAGGAAAACCAGTAAAAAATACTGCCGCGTTTCATTGTTTGACATATTGTCATTCCTGCTTGTAAGAACTGTGAGTGCCATGTGGCAAGTATGAGTTGGAGCAATTTTGTAGTGTGACAGGGAATAAGATGTTGTGGTCTCTGGTCACTGCAGACATGTGTCACAAAAGGTAGGACCATAATATTTGCGTTGTGTGTTTCAGCTGTTATCCATAGATACCAAGAAGACATTTGACTGATGTTACTCTCTAATCAAACAGAACCACTGAAGGCTCAAGCAAATATTCACACAAATAAAATTGAAAAGTTCTTAAATTAGTAAAGCTCTAGCAAGTCTTCACATTAATACAAAAAAAGCCATGTAAGTAATACAAGGCAGTAATTCCATACCAGGCTGCCTCCTCCTTTCCCAGTCAGAGGAAGTGGTAGCTGTGGTTCTAATGTTTAATCTGCAATCTGTTCCCATCATGCATGTTTGTGGATCCAACACCTTGCCATTGAGACGAGGGGTTGAGAAAGTTTAGGAAGGCTGTGTGTTCTTTCAAAAGTATCTGTACCAGCTTATCAAGATTTCTTGTGAAATGTCAGACAGCACTTAGTCCTGAGAAAGACTTTTGCTTCCTTCTGACACACGTCTTCCTATTTAGAATAGATGATGCTGCATGGTCAATAAATTCTATTCACCTTTAACCAGTAGTTCCTACTAGCTGTTTTCAAAAGCATTTCTGTTAGTAATTTGTTTTTGTGCCCGCTCTAGAGATTTTTCGAGAGTTTGGTCAAAGCCACTGAATTGCAGTTTAGGACTCAGTAAACCAAATAAAGTTGTGCTGTGCTTTGTGTATTACAGGCAGGCCTAAAATTAAAAATTAACTTCAACTGCAGTTTAAGACTTCTTGATTTAGGTGTTTTTAGGAAAGGAGTTTCCAGCCTTGGCCAATACTAGAGTCTATAAGAGAAGAAAAGAGGGTATATAATACAATTGTTTGTCCAGGTTTGTGCACCAAACTAAGGCACGATGGGGCAGCTGTGGGATGTAGGTCTCACACCTCACTCCAGTGTCCATCCATCACCTCAGCCCCAGTGGGTGCTGCAGTTATCATCCTGCTCATGTCACCCATTTTCTCGGTTTGGGTAATAAATGGACAAAGGGGCTGTGATGCTGTCCCTGCCTTCCAGAGGCTGCAGTGCCTCTGGTAAGTGGACCTGGTGTATCAGAAGTGCCAACTTATTTAACATTCTTGCCTAAGGTGATTTTCACAATAAACAGCTCTCCAAAGCTGCCTTCCTCCTTAAAAAAAACAACAGCCATGTACAGAGGATATTCAGAAATGTTTTTGAGTGCTAGTGCTCAAGAGAAACGAGCAAGGATAATCATGAGAGGAAAATTCAATTAGTGGGAGAGGAAGGAGTTGGAAAAAGAAAGGAAGGAAATCATTTCATTGTTCAAGCTGGGCAGCGTTTACCGTGAACCGGTTTGTTGTTGTTTTTATCTAAAATGAAGTGTGAGCGGGTGGGCAGCTTGCCGAGCAACCTCATGATTCCATGTAACCTGGGGGCAACGGCAGCCATCCTGTTAACACGTCCCTCTCATTCTCTCCCAG
Seq C2 exon
AGCACGCCCTCTGCCAGCTCTCCCTCATCACCCGCGGACCAGAGCCTGCGGACCACAACGGCATCGCCCTACACCGAAGTCCAGGAGGAGAAGCCGCCCAGCGCCCCACTGCGCTCCGCCGAGTTGAGGCCTAGCCAGACACACCTCTTCAGCCACCTGCCGCTGCATTCCCAGCAGCAGGCCAAGGCACCCTACAGCATGGTGCCAGTAGGGGGGCTTCAAGTTGTCCCCACCGGCCTGGCCACCTACTCCACCTTTGTGCCCATTCAAGCGGGGCCGGTGCAACTCACCATTCCTGCCGTTGGCGTCATCCACAGAACTACGAGCGGCCTCGGCGAGGTGGGTTGCGCCGCCTCGGGTGCCGCCACGAATCCTGTCGGGGTTGCTGAAGTGAACAGCGTTGTGCCGTGTATTCCTATTGGCCAGATCAACGTGCCGGGCATCCAGGGTCTCAGCACGCCCAGCTTGCAGCCTCTCCCACCCCTCGGCATGGAGACGGTGAACATCTTAGGCCTGACAAACACAAACATAGCCCCACAGATGCGCCCGCCTGGAATCACTCTGAATGCCGTCGGCCTCCAGGTCCTGACTGCCAGCGCTACCCCCCAGGGCAAGCCCAGCCCTCAGGCGCACATCCCAGGCTTGCAGATACTGAACATTGCCTTGCCCACCCTCATCCCCTCCATCAGCCCGGTCAGCGCGGATGGGCAAGGAGCCTCTGAACCACCAGCTGCAGGCAGCAAAGCTGGTGACGTCCAGCAAGAGCCAGCTCCTGCCAGCTTCCCCGACGTCGGCCATGTGGCCAGGGCTGCTTCTCCTCAGGTGGTTGCCGGTGCCCAGCAGTACAGCGTGAAGAGCCTTGCGGAGCCTGCCCCTGTGAGTGACTATGAAAGACTCAATGGGCCGGGGAAAGGCGATGCTGAAAAGACTGACCTCACCAACCACAATAAGCCCAAGTGCGACGTCTCTTTGGTTCAGGTCAAAAGGGCTTCCCCGGTACAGCCCCGCTCGAAGGTGAATTCCGATGTTCTAACCAAGTCCCCGGTCCATCGAACTGTCTCTCCGGATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739:ENSGALT00000020790:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=0.567
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]