GgaINT0091847 @ galGal4
Intron Retention
Gene
ENSGALG00000010910 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr2:30862905-30869238:-
Coord C1 exon
chr2:30869172-30869238
Coord A exon
chr2:30862954-30869171
Coord C2 exon
chr2:30862905-30862953
Length
6218 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
TTCCTTTCCTGGTATTTTAGGTT
3' ss Score
9.49
Exon sequences
Seq C1 exon
GCCTGATCAAAAAATAGAAGATACAGCAGAAACCAATGCTGAAATTCTTGCCCGTCTCACTTCTGCG
Seq A exon
GTAAGGTCACTGCATCAAAGTTGGTACTGATCGTGTTTGAAATACTGTCATGTTTTGAATCTTTTCAAATTAAAGAACCAAGTCTTAGTGAGGAGGTGTTTGTAATGCAAACTACTTTTTTTTTTTTGTCCCTGAAAGGAGGAAGCTCTATTAGAGTTTTAGCGTGTAATTACACAGCTATTAAAATCAGTTCAAGGAAGGACTGCAGTTTGCTCTCTTATAATCCACGCTACTCATGGCCCAGGAAATATCAATTTGGAGAATCATGTTGATTTTTTTCTGCCAGCTACTTTGTGCTCAGATCCTCTTGGTCAAGTGGAACGCAGCAATGGGATGGGGGGAACCAAGGAAGAGAAAAATGGATCAAATGGTATGTTGAAAACTCTGAAAAATTGAAAGGAAGGAGAACTTGTGCTAAGCTTTTTAAAGACAAATGTCTTTACAGAAGGCATTTACAAAAATGTGGAAAGAGCGATTCTCCTTGCTCAACACCTTGTGCAAAATTAAGAGGCTAGAAAATTGTTTGTAAATTGTTCTCTATTTTCCATATATGCAAATTCCTTGTTTGTTTTCTACGGTTTTTTTTTTCTGACACTAAAAATGAAAGAATGGGAAACTCAGAAACGTGATTTCCTCCATTTTTACTTTTACTTGGAGTAAAGAATAGAAAAACACACTTACTGCAAAGTCATCTTTAAAAAAAAAAAAGCAACAACACAACAACAAAGCAAACAAAACCCACAGAACCACTTTCTCTATAGAATGTTACCAGTACCCATCGAAGGGTTCTTCTCTCAAGACTAAAAGAATACATTTTCCCTCTACAAAACATGTTGAGAGCACTGGATCAAACTGTCGATGGATACATAGGAGGAGAATGCACATCTCTAAACATCTCTAAATGCACTGGAGGAGTAATTGACATTGAGTTCAGAGTGCTTCTCATCTATCTTGCAAGGTCAAACCTTTGAACTACATCCTTGGCGATTGCAGCAGTAGGGCACGTGTTCAATTTTGTTTTATTTTTAATGAGCTGTTTTACCACTGCAGCTAACTAAGTGAAGTAAAATTAGGCAATTGCATTTGCAGATGGCCAGAGGCCCATTCCTTGGCATGGTGTTGGTCAAAAACAACTTTTTTTTTTTCCTGCTTTTTTTGTTTGTTTTCTCAGAAAACTGTACAGGCTCTCTGTAGCAATTTTCTAAATTCAAACTCTGGACAAAAAGCCTGGGAACAGAGCAGAATACCTCAAATGTTAACATTTACATATTAACTTCTCCCTCTAAGGGAAGCTGAAATATCATCTGGAATATGGCTTTACTCCATTTCCTCCTTCCAGTAGTCTGGGATCTGAAATTCTTCTTAAGACTTCATGGAGAGCCTTCATTTGCTTCAAGGGAAATTGAACCCTCAGCTTTCACTGTTCGACAGGATGCTTTCCTCATCAGGATATAGGTTTTCTGTGGTTTTTCTTGGAGAAGAGCTCTGTGAGCTGGAGCAGGAAGCCAACCATAAGGGCCATGACTGGAAATTTGTTCACAACGTATTCCTTTTTGGTTCACCGAATATTCTTGTATTTTGTACAGAATCAAACCACTCTTACTTGAAGAATCCGTACTTCAGGATCTGCTCACAGTATTCTTCATATTAGTGTTTCAGAAGTGAAGAACCTTGCCTCCAGCCCAGCACTAAAGCAGCTGGAGATCAGGTTTTACTTTTTCATGCATTTCTAGGTACAGAGGTTCAAATCCCATCAGTCAATAGGGGAAAACAGCCTGCAGGTGCTACTGCTGTCTATTCTGCTTTCTCTTTGCCTTTCCTGTAACAGATTAAAACACACTGTGTCAGGTCAGAAGGATGCACCTGTGCCAAGTTTTCTTTTTTAGAGGTTGAATATCCAAATTCATATATATATATGTGTATATATAAACTGACTTGGGAGGATCTCCCCAACCAAGGAGTCTGTGTGCCTAACATATAAGTCACCAGTTTAGTGTTGGAAAGTGCACAGCGAACTTGTAGGCGTGGGTGCACTGAAGATCTAGTTGTGTACTTCTCTATCCCTACTAAAGCTTTCATGTTGCAAAGGGTAGAACGCACTTCACTTCAATACAAGTGGCCACGTGGCAAACATCTACATCTGAGCTAGTTTCCCCAGGCACTCCATGGAGCCGGGGAGTAGGAATAGGCATTTTTAGGAGGCTGAATATGTGATTTATTTTGGAAGTCTGGCTTTTACAAAAAGCAGTCATGCCTTAAGCTGTAATGGTGATGTATTCACTCTCTATAAAGGGAATGGAGAGTGACTGGCACAGACACCTGCACAAGGTTGGTGAATTCCTCATTTCATTTATTTTACTATAGTCTGGCTTTTTTTTTGTTGGTCTTTCTCTTACCACTCCCTAATATTCTTTGTTACCAGGTGTTTTTTCTTTTGTATAACTCTACTTCTCACATTCACTGCACAATTTGCATGTTTTAGGATAACTCAGCCATTTGAAATGGTTAGGCAAGGAAATGCACTCTTAGTTTTAAACAATGACTGTGGAGATCATAGAAGATAAGAGTGACGGCTGTGGTGAATTATACCAAATCAGAAGAGCAATTGGAGGAAACTGCAAAGGTTTTTTTTCTCATCTTAATTTGTACATAATCCATGGAATACACCTCTTTTAAGAGCAGAGTCAGGTACAAAATACAAGAAACTAACTTGGTCACGTGTTGGTTTTTCTTTACGATTTACTCTACAGTGGAAGAAGCAGAGTCAGTGAAGGTAACTGAATAGAACCTATTGAGCTCCACGCTCTCATTATATACTCCATTGCAATGAGTGTTTAAGAAAAGTATATAGATCACTTCTGGGTTTAAAGAAGAATTCCAGAGCTGCAATGAATTCTATGCCATGTCCCAAAAAAGGAGCCACATCTAAAAGGACTTGTAGCACTGTCTGTTAAAACCAGAGCACTTTGAGATGTCTCTGACTGTTTCTGTTGCATCACCTTGTGGTAAGGTAGAAGAGCATACTGAGGTGTTAATGCAGTGCATCTGGGAAATGATGAAGCAGGCATACAAGTGGGTACCACTCCGTATGAATACTCTTGCTCTTTCTTATTGCAAGAAGAAAACTGAATAAGATGTGGCAAGGTGCATGCACAAGACATTCTCTTTTGACTGAAATAATAATATTTCTGTAAATACAGTGTGGTGAGCTAGTCTTAAAGCTGAATCACTCTGCATTGCTACTCAAAGTGGGATACTATTTAGATAGTGCTCACTTTGTGGTGACAAGCTACGTGTACAAACAATTTTTTTTATATTTAACATCTCCATTTATTACGGCAGGCACAGCTCTTGTTTGAATATATATTTTACTTTGAGTCTAGATTATTATCTGCAATGTGATGTGCGACTATCGATTTTGTCAAACAGGCAGTAACTGAAATCCTATTAGGAAGAAGTATGATAATGCGTGGCATGTGTGCAGTGAGGAATGAATGTTGTACACTGATTTCCATTGGTGTAATGATGCATAGGAATTGCACGTCCAGCAGAGATGTCAAGTGCATTTACGCTAAAATAGACAAAAGTATATACATTATGAAATCTAGGGACACCAGGCAAATCTGGAAGGATGCTTAGCATTACCAATTCTTAGCAACTGAAATGAATCCTATGAGAGGGAGCTCAGACAGACACGATGAAGCCCTTTGAAGAAGGAAAGTTTGCTTAATATTAAGGCTAGAGGAACATTTCCCCCCCCCCCCTATTTTAGGTTAATGGTTTTGGTCAGATTAAGTTCAGTGCCAGCTACATTCTTGGCACATACCAACCAACAAGATATTTCGCTTAATATAGAGGAAATACAGAAAAGTAGTGCTGTTACTGCCTGTCATGAAAACAATGTCGTTCAAACTTAGAAAGTTCTACCTTGTAAGAGTAAGTAATAGTGTACATAGAATAGCAGGATGCCTCAATAATGTTTTTTTCTCCTGTTTCTGGGAAGGTGGTGTTTTTTTTTTTTTGTTTTTTTTTTATGCTCACGAAGAGATTTGCATTTTTCCAATTCTGTTTGATTGGATTAATTGGTATGTTTACAACTGTTGAAGACTGTTATGTCTCCTAAGGCTAATCTTGAGATAATGTGTTTTTTAAACACTAAAAGATACAGATGAGTCATCAGTGCACGATTTCATATTGTCTGCACCTGGGAGAATAGACCAGGGCTGGGGCACAGACATTGGTACCTCCTGCTGAGGTTAATGAAGAGCACGAGCTCTGAGCAGTTTAGCCAAGAGAAGTGCTGGTGGGGTTATTCAGAAACGGGTTGGGCTTTTATGGGAAATCTCTCTGGATAGCTTGTGTGTGTTATTACTTGTGTATTAAATGTTGCGAATAAGCCTGCAAGTTGTTTTGCCAAAAACAAACAAACAAAAAAAAACCCCAGTTCTTTCCTATCATGCTTGCAGTTTGTGCTTATATTAAACATGATTAACAGTTCTCCAGACATGGGAATGAGTATACAGGAAGGAAGGAAGGGAAGGTGATATTGCCAGCTTGAACAATTGTGCTGGAAACAGGACAGCATTTAAGAGATCTGTGGCACTGCCTTCATACTTTCCTGCTTGGAGTGGCAGAAAAATAAGTCCCTTTCCACGGGGCAGCATCAAGGAGTAGAAAAGATCCTTGTACCTTGCAAAGGCAGCAAAAAAGCTGTCCCTTCCTTTGCTCTAAGGGAAGGAAGGATGCAAGTGGAGGAAGGATGTGGCCTCTGGTATGAGTGCTTTCTGCCCAACATGGACCAGGCTGCTGGATGGCAGCTGTGTGATCAGCGGATGCAGGGTTACCATTGTCCTGAGATGTCCCATGCAATTTTGTCTTCTCCTGATAACCACTGCAGTCTGTCTTTCTGCTCAGAGCAATATAACATGGATTGTTTTGATTTCACAGTTTTAAACTTTTCTTCAGAGTTGTGAATGGGATATTGGCTGTTGTTAGTGACTGTGCTACTACAGGGGCTCTTCGTGGGCGTAGTTCTGGTCATACTCCATGTCTTGCAAATGATGTTTTAAATTTTGCATCCTTTTAGAAATCATGTTCCAAAACTCCCACTTCAGAATAGCCTTGAGCTGTGCACAGGTCTGTTAGACAAAATAGCTGGCATGCCGTGCAAGAGACTTTGTGCAGAGGGATAAGACAATCCCTAGAAAAACTGTTGGAGCGTCCCACTGTTCTTTTGTTATTCTCAGGATGGGCTGCCTTGGGAAGCAAGAGGAGCTGGGAGAATTGGAAGCGGCAGAGAGAGGGGAGTGTTGTGGCCTATGCAGGAGAGCACCTGGGATTCTGTGTCCTCAAGTGCAGAGCACTCGAGGCACCTGCGGGGAGATGGTGATGGCAGTGAGAAGTATGCAGCATAAATGAAATAAGCATAATGTGGAAATTTACCAATTTTCTTTTTTTTTTTTTTTTTTAAGGGAAAACATCTACGAAGGGAAAAGATTATAGGGGTGAGGTGGCTAAAGAAACTGTGTCTGGTAGCACAGGGATTACATGGAAAATAGAGGGAATTCAGAAAAGCAGAAACAAGAGGCTGAGAGAGGGAGTTGGCTGGCATGGCAGTCATTTCATCACATCCCGGTAAGGTAGCCTGGAAACGTGGAAACCAGATGGCTCCTATTTCTGCATGTTCACCTGGAGCTGAAGTTTGGTCCTGAAATGGTCAGCGGTGCAAGTAGGAGAGGTTGCTTCCTCCTCAGGGCTGCAAAAGTGAATGTCAGTTATATGCACGAACCTTAGCCAAACCCCAGCATGGGCAATGGGCCTGTGCTGCAGTCACGCAGAAGTCCAAGGCTACAAGGGTGCTCAGCAGAGATAAAATAAACATTTAACAAGGAAAGGAAGAAGCCTTAAGTGTGTGCTTGTGCAGGAGATATGCTGCACAAATAAATTGCATGTCAAGCTACTGAATTAGCCATTCCCTAAGGAAGGTGCAATATTTACATTAAATTAAGGTTGAAACAAAATCATTGTCACGGAATTCCCAGCTGAAAAGAAGAAATAGATTTCCTAGAAAAGTGACTGCAGTTTCGAGACTATCTGCATAATGCCGCCTGTGGTTTACTGCTCCAAAACTGATACTCTGTATCCTACCAAGGTTGCTTTTTGTTTGTTTCACTGAATATCAGTAACAATAACCATTGCTTCCTTTCCTGGTATTTTAG
Seq C2 exon
GTTCAGAGAGAGCTGGCTGCTGTCATTGCCTTGAAAGCCAGGAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910:ENSGALT00000017745:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]