GgaINT0091867 @ galGal3
Intron Retention
Gene
ENSGALG00000010910 | RAPGEF5
Description
NA
Coordinates
chr2:30666360-30669651:-
Coord C1 exon
chr2:30669564-30669651
Coord A exon
chr2:30666425-30669563
Coord C2 exon
chr2:30666360-30666424
Length
3139 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTCCCTTTTTTTTTTTCCAGATG
3' ss Score
12.53
Exon sequences
Seq C1 exon
GACCCTTCGCTGAATCATAAAGCTTACAGAGATGCATTCAAGAAAATGAAATCTCCGAAGATTCCCTTCATGCCCTTACTTCTGAAAG
Seq A exon
GTAATGTTAAAGCTGGTCTGCTCTTCTTCGTTATGTGAGTGCATGTGCATTTGTGGAGGTTGGTTGACATAAGGAGATTATTCTTTCACGTGGAATTTAGGTAAATATGTGGCAGACACAGTGAAATTTACAAGAAAACGCTCAGTCTACATAATAATAAACACACCTGCTTTGCAAGTCAGGAGGAAAGTGGGAATTTTCACAGCTTTTTCCAAGCTGTGCCCTACTGCAGTCCAGAGGGTTTGCCTGGCCTCGCCAGGGCAGAGCAAGCTGATGTCACTCATTTGGTAAAGCTGAGCGAATGGGATGTGCCCCACTGTCCTCCTGCAGGCTGAAGGGCGTGACAAAGCTGCTTGCTAGTGCCGTGACTTGGGCAGCAAGCTCAGTGGCAGGTATCTCGGTTATTCCATTATCTCGGTGTCATTAATTGTTAATCACCTTGTCTAGAACGTGACAAATTCATTTGATTACTCCTGTGTTCCGAAAGTGTTCTTGTTAGGCTGTTTGTGCTGACCTGCTGCTACTGCTGCAAGTTTAGCATGTTTGGAGACAGTTCTCCAAATAAGCCAGTGACAGTTTGGTAGCCACAAGACACTTCTCTTTGGCAGGCTTCAAAGGCATTTGCATTAATTGAGCTGGATACAATTATCAAGGCTTCAAAGGAAGGTAAACCTGAACAAGTAACTTGTAGCAACGATGTTTGCACTGCACTGCTGTGAAGGGTGTAAAAGCATGCACCTAAGAAGCATTCATGCAGTGCAATCTCATGTTTCTGAAGTGTGCCAGATAGCAAGGAGACAGTGCAAAATAACACAGCAAGCTTCTTCAGTGTGGTAATTCAGAAGGAAATGTTGCCAAGGTTGGCAATTCCCAATGTATTGCAGTGTATATGATGTAGGAGGAATTTCTTTACTCCAAGGGTGGTGAGGCACTGGCACAGGCTGCCCAGAGAAGCTGTGGATGCTCCGTCCCTGGAAGTGTTCAAGGCCAGGTTGGGTGGGGCCTGGGCAGGCTGAGCTGGTGGGTGGCAGTCCTGCCCATGGCTGGGAGTTGGAAATAGATGATCTTTAAGGTCCCTTCCAACCTAAGCTGTTCTATGACTTCATTCTACATCAAGCGTGTTTGTATTAAAATTATTTGCAAAACTATTTCTATGACGGTAGCACAGAAATCATTAATAAATTAACAAATTCCTATCTTTTAGCACAAGAGGAATAAAAGTAGTTTCAAGTAAAAAAATAAGAACCCTGTTCTAAATATGAGAAATAATTTCAGAGTGTCCCTTTAAAGTTAATTAAATTTAAATGTGGAGCTCTCTTACAGGGAGACACAGCATTAGAAAGTCAGGCAGATTTTTCAAATATGCAATAAAATGCTGTGTTGTATCCTTACAACATAGCTCAGATGCAATTTTCTGCTCCATTGAATTTATCTAGACTCTTGGTTGCTGGCCACAAAGCAAATTTCTGTTTCTTCCACCCTCAGAGGTATCCATTGCAGTCACAGACTTTAAAAGCTGTCTGGAAATTTCTGCTTCCAGTAGAGGTTCTTCATTAGAAGTGACCTTTTTTAACTGTGCTGATACAGAGACAAGTAGTGCCTGCCTGCCAGTAGTCTTGAAGCTTTGTCCTTTCCCCGTCCCTTTCCCTGGGCGCTCAAAGATGGAGAAGGTGTGGTTGGTCCTGTGCCCTCCTTCCCCCTGATGCTCAGAGTGCTGCCCAGGAGCAGGAGGTGGTGGAGGCATGCCCAACGTGTGCCCATACTTACCCCACTTGCTCAGGAGTGCTGGAGTAGATCCCAGCTCTCCAACACCCCTCAGGCAGAGCTCTGCCTAATGAGTCCCAGCCGTGGGTTTCCAGGCTGGTATTAAGCCATTAACATTTCCATTCTAAGCAATTACAAAATCCCCCTCAGGCACAGAGCTAATCTTTAAAACAAAAGGAAATAAATCAGGTTGGCTGTTTTGGGGTAATATGAGAGAGACTATAAAGCAGCCCCCAGTGTCAGCTGCAGGTTCTGAGATCTAAAATCCCCCAAATCTAGGGGACCAAGTAGATGTGAGAGGGAGCCCAGATTGATCCTGAGACGTGCAGTTATACAGCTGTCCTGGGGGCTGACACCTCAGCAGGGAGAGCTGTGACTTTTACCAAGGAATGGTGTCAGTGCCCTCTTGTTAGATCAGTGCTCTCTCATCCCAGTCCTCACAGGCATGCACACATTCATGCGGTGCATGGCCAAAGTGGGAGATGAGGGGTATGGTGGTGGTGCTGCTTTATTGTCATCCAGAGGATGCACTGCTGAAGTCTGCCTGTGACCTCGGTATCTCATATTCCAGACAGGTCTTGCTTTGTGTCTAGTATACATTAGAAAAACAGGGAAAATGACCTCCAGTTCCAGTTTTAATCATAATGTTAGCAGTGCTTTTTTAGCCTGATTTTTTTAATGATTATTTTTTTCCCTCCTGCTCATTACAGGGCGTTCAGTTCCCTTCCTGGAGCTAAATATAGGCCTTTTCCATTTCCTCCCACTGACCTTTTTTTGTCTTTGCAAATCCTCCCCAACAACGCTGTGTAAGGCTGTTTTGATTCCCTAAGGTTTCCCTGGACATAATGCTTACCTCATGCATGGCTTTGAACTCTAATTTGGTGGCTCTCATTTAACCTCACCGATGTCCCTAGGGGTACTTCAGAGAGTTGCAATGGAGAAAGAGGAAGGGGTTGCCAGAACTGCCCCCAAGCCTGGTGGCTGTACCCCTGTGGAGCTCATGGCTCGGGGACTCAGTCCCAGCCTGGGCACAGCCCCAGGTATCATGGCTGGATCTATCCTGCAAGCGTGTGCATCAGGCATGTCATGATGGGTACCTCTCTTGCACCCAGTCATTCTCTGCACCACATGCACTTCATAGGTAATTCAGGTTTAATAAGAATTCTGTGCTCTGACTTGGAAATCCTCTTGCTGTGATGTCTATGTAGTGCCTATCATTACACTAAGCTTTTTTCACCTTTTGTAAGGTGTTTTGATAATCTTTAACGGGATGTTTTCCTATCTTTTTCTTTTAGTTGCTATTTAGAAGTATCATTTCTTTGTACAGAACAACAAAGTCCTGCAAAATAATTATTTTCCCTTTTTTTTTTTCCAG
Seq C2 exon
ATGTAACATTCATTCATGAAGGAAATAAAACATTTCTGGATAACCTTGTTAATTTTGAAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910:ENSGALT00000017745:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.7=100)
A:
NA
C2:
PF0061714=RasGEF=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]