GgaINT0093169 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78540636-78541787:+
Coord C1 exon
chr2:78540636-78540835
Coord A exon
chr2:78540836-78541633
Coord C2 exon
chr2:78541634-78541787
Length
798 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTTGGTTTTATTTATTTTAGATA
3' ss Score
8.76
Exon sequences
Seq C1 exon
GATATCTGCATAAGTGCTGTGAAGGAGAGAGACATTGAACAGAAGTTAAAACAAGTGATAGCTGAATGGGATAACAAAACATTTATCTTTGCAAACTTTAAAACCCGTGGGGAACTTCTTCTAAGAGGAGATAGCATATCAGAAACAATTGCTACCATGGAGGACAGCTTGATGATTCTTGGTTCTCTCATGAGTAACAG
Seq A exon
GTAACAAGAAAAGCAGAGTCTACATGTATGTGTAAGTTATAAATACAAGCAAGAGGCTTTGTTTCACAAAGGAGAAGGAAAGTAAACATCTAGATAAAAACTAAAAGCTTTCTTGTCCTTGAGCTGTTCATGGGCTACTTCTCATTGTCTATATTCCTGTTTTGAAATGATGTGTTCAGATTTCCTGACTAATTAGTTGGACAGTTTCCATGGATGCAAGAGTGGTGACAAACATAAAAGGGAGCACTGCCTTGTTGTGGCAGGGGTCCTGCTGGGATTACAGGCATTGCTATTCTTCCCCAGTGGTAGGCCACCACCTCTTTTACAGAGACTTTTACTGAAGGTGATGAAAATCCCTATTAAAATGAGCTACAAATTATCTCATGTGGAATGTCGAAGCCCCTTGATAAAACAAGGAACACAGATCCTGATCATTAGAAAGATGTTCAAAAGCAAATGTTTGTGTAATAAGGACCCACTGTGAGTTTTGAAGCTTTGAAAATGTTAGATAGTCTCTTTTTGAATATGCATTGCCTTAGAGTGAAATTTAAGTTTTGCTCCTGTCAGTTCCTATTGATTGATAGCTGTACTACACACCATGTGGACAAAGCGGCAAACTGGAGCTGATTAGGTTTATGGCTTTTATCTGTGCTGAGTCAAGTGTGGATTTGTGTACTTTAACCTGACAACAATAAAAATGGCAGGAATATTCCTCCTCCTTATGTTAGGGGACTGTGCTGGCTTTCAGGAGACTTGTTTCCTTCTTAAATTAAAAAAACTTGGTTTTATTTATTTTAG
Seq C2 exon
ATACAACACGCCCTTCAAGACACAGATTCAGAAATGGGTGCACTATCTTTCCAACACGACAGATATCATTGAGAACTGGATAACTGTGCAGAACTTGTGGATTTATTTAGAAGCTGTTTTTGTTGGTGGTGACATAGCAAAGCAGCTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGTGAAGGAGAGAGACA
R:
CTTTGGAAGCTGCTTTGCTATGT
Band lengths:
342-1140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]