GgaINT0093394 @ galGal3
Intron Retention
Gene
ENSGALG00000013073 | UPP1
Description
NA
Coordinates
chr2:82222031-82222349:+
Coord C1 exon
chr2:82222031-82222050
Coord A exon
chr2:82222051-82222284
Coord C2 exon
chr2:82222285-82222349
Length
234 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
GTTTTAAAATATAATTCTAGGTC
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTTGGTCAACAGGAGCAGCG
Seq A exon
GTGAGGCGGGGGTTGTCTTAGGAGGAGGGCTGGGGGGATGCTCAGCCGTGAAAAGAGCGGGTGCTCGTTTTGCCAGAGTTATAAAAGCTGTAGTGTGGCTGCGTTGTTTTTTGGTTTAGTATTTGTGATAGTGTCATCTATGTAGGGGGTTTCTATCAGTGTTAATGATGCTAGCTTTACAGATGAGACTGTTCTAATGCATTTATAGCAAATTGTTTTAAAATATAATTCTAG
Seq C2 exon
GTCCAAGCATACATGGCTCCTGGTGTCTCGAATGAGAAGAAAACGGAAGATGAACAGTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073:ENSGALT00000031003:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]