GgaINT0094211 @ galGal3
Intron Retention
Gene
ENSGALG00000012821 | TUBB2B
Description
NA
Coordinates
chr2:67500342-67501135:+
Coord C1 exon
chr2:67500342-67500398
Coord A exon
chr2:67500399-67501026
Coord C2 exon
chr2:67501027-67501135
Length
628 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
TTCACAAACATTTCTTCCAGTTC
3' ss Score
6.69
Exon sequences
Seq C1 exon
ATGCGTGAGATCGTGCACATCCAGGCCGGGCAGTGCGGCAACCAGATCGGCGCCAAG
Seq A exon
GTACGGGCCGTCTCTCGGTTGCCTGCCGAGGGTCGTGCGACCGGCACCGGGGTGCAGCGCGCAGCCCCGCCGGGGTTATCGGCGAGCGGAGCGGGGCTGCCCTGGGGCTTCGTGCCGGCTGGGCCGTGCCCGGGCTCGAGCCCGCGGTCGGACGGAGCCGCCTGGCAGCCGCGCGTACGGCTCCTGAGGGAGAGGGGCGCGGTGTCGGGGCCAGACCCGGGTGCGTGCTGGGGCCGCTGTCGTCTTGCGGTGACGTTGCCGTGTCAGTAGAACGGCGTAGCTGCTCTAGGCGGTCTTAAGCCGCGGCTAGACAATAGAAGAGTATCAAATCGAGGGGTATGCGAGCATCGTCACCCCGCGGATGTGTGCTAAAAATGAATTAGCTCGAATTCCAGCGCTGCAGCTGCCCGTCTGCCCTCCTCTGCTCAGCGCTGCTTCTGTTAATTCAGCTGCCGCGGCCAAAGGAAACTCTTCTGCACTGACTCATGGAGGTGCAGCTTCCTCCCGGGCAGCTGCTCGGCCGTGCTAGGGAGTGGTCGGGGACGCTGTGTGCACGGACTGCAAGCACGTGTGATTGGCACCGGCCAGCTGTACTTAACAGCTGCCCTTTCACAAACATTTCTTCCAG
Seq C2 exon
TTCTGGGAGGTCATCAGCGATGAGCACGGCATCGACCCCACCGGCAGCTACCACGGCGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012821:ENSGALT00000020914:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=PU(7.2=84.2)
A:
NA
C2:
PF0009120=Tubulin=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]