GgaINT0094213 @ galGal3
Intron Retention
Gene
ENSGALG00000012821 | TUBB2B
Description
NA
Coordinates
chr2:67501387-67502714:+
Coord C1 exon
chr2:67501387-67501497
Coord A exon
chr2:67501498-67501653
Coord C2 exon
chr2:67501654-67502714
Length
156 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TGCTTCTGGTCTGCCCGCAGGTC
3' ss Score
11.99
Exon sequences
Seq C1 exon
GTAACAAGTACGTCCCCCGTGCCATCCTGGTTGACCTGGAGCCCGGCACGATGGACTCGGTGCGCTCCGGCCCCTTTGGACAGATCTTCCGACCCGACAACTTTGTCTTTG
Seq A exon
GTGAGTGAGCGTGCCGTGGAGGCGTCCCCCAGCGTGGGTGAGGCGAAGCGGGGATGGGAACAGGGGGCGTGAGCCTCGCGGGGCGGACAGGCTCAGGTGGACCTCGGTTCCTTGCGGGGGCACTAAGGTGGCGCGTTGCTTCTGGTCTGCCCGCAG
Seq C2 exon
GTCAGAGCGGGGCCGGCAACAACTGGGCCAAGGGGCACTACACGGAAGGCGCTGAGCTGGTGGACTCTGTGCTGGATGTGGTGAGGAAGGAGTCGGAAAGCTGCGACTGCCTGCAGGGCTTCCAGTTGACCCACTCGCTGGGCGGCGGCACCGGCTCGGGGATGGGCACCCTCCTCATCAGCAAGATCCGCGAGGAGTACCCCGACCGCATCATGAACACGTTCAGCGTCATGCCCTCCCCCAAGGTGTCGGACACGGTGGTGGAGCCCTACAATGCCACCCTTTCTGTGCACCAGCTGGTGGAGAACACGGACGAGACCTACTGCATCGACAACGAGGCCCTGTACGACATCTGCTTCCGCACCCTGAAGCTCACCACTCCCACGTACGGGGACCTCAACCACCTGGTGTCGGCCACCATGAGCGGCGTGACCACCTGCCTTCGCTTCCCCGGCCAGCTGAACGCCGACCTGCGCAAGCTGGCGGTCAACATGGTGCCTTTCCCCCGGCTGCACTTCTTCATGCCGGGCTTCGCCCCGCTGACGAGCCGCGGCAGCCAGCAGTACCGAGCCCTGACGGTGCCCGAGCTGACGCAGCAGATGTTCGACTCCAAGAACATGATGGCCGCCTGCGACCCCCGCCACGGCCGCTACCTGACGGTGGCTGCCATCTTCCGAGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTGAACGTGCAGAACAAGAACAGCAGCTACTTTGTGGAGTGGATCCCCAACAACGTGAAGACGGCCGTCTGCGACATCCCCCCGCGTGGCCTCAAGATGTCCGCCACCTTCATCGGCAACAGCACGGCCATCCAGGAGCTCTTCAAGAGGATCTCGGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCCTTCTTGCACTGGTACACCGGCGAGGGCATGGATGAGATGGAGTTCACCGAGGCGGAGAGCAACATGAACGACCTGGTCTCAGAGTACCAGCAATACCAGGATGCCACCGCTGATGAGCAGGGTGAATTTGAAGAGGAAGGAGAGGAGGATGAGGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012821:ENSGALT00000020914:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.7=100)
A:
NA
C2:
PF0009120=Tubulin=PD(59.0=37.0),PF0395312=Tubulin_C=WD(100=34.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTTCCGACCCGACAACT
R:
TGAACGTGTTCATGATGCGGT
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]