GgaINT0095053 @ galGal3
Intron Retention
Gene
ENSGALG00000007145 | F1N8N7_CHICK
Description
NA
Coordinates
chr2:13984241-13985285:+
Coord C1 exon
chr2:13984241-13984336
Coord A exon
chr2:13984337-13985195
Coord C2 exon
chr2:13985196-13985285
Length
859 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACTTTCATAAATATTTACAGGAA
3' ss Score
6.93
Exon sequences
Seq C1 exon
GATTATCCCTCTATTGCTCATCTGGTACAGAAGCTTAGTGAGAACAATATTCAGACAATTTTTGCTGTTACTGAGGAGTTTCAGGCAGTTTATAAG
Seq A exon
GTAAGGATATATAATGCATTTTCTGATCTCTGAGCTTCTTTCCCCTCAAGAGACTGACAACTAAGAGACTGACTTAGATCTGGACTGAATTTATTAAAGTTGCTTGTTATGAAATTAAAAGACGTACGGATGGAAGTGATCACAAAACCAGTATTTTGCTCTTCGTGCTTTCATTATTAAGCTTCTCCCCTTCTCCCCACTCGTTCAAAGTGATGCTGTGTATGTAATTTCCAAGAAGAAAATGGATCTTATACTTCTTAAGAAAAGAATTCTCCTTGACTTTCTTAGTAAGTAAAATTGGGTGGAGAACGTATTTGCAATGCTTCTTTTTATGAATGTTTTTACAGCAAAATAGTTTAGGAAAGTGTAGCCACTTATGAAGGAACACATTTTGTTCTTTGTGATCTGTTTATATTCCTCGTGGTTAAAGTTAACTAAACTGCTGCATATGATTATGAAATAGGAAATGACTGTGTGAAGGAGATGCATTTTTTTCCTCCTTTCAAATTTTAAGGGTTTTTTTTCTTCTGGAAATCACAAATTGTATGCCTATCTCTAGAAGTGTTGTGCTTCTTTTTTAAGATCATGAAGATTTGTGGCTAATTTTTGCAAGAGAATATCTTCATTTTATTCTATTACAGTAACATCAATGCCTTAATTGCCAAATTTAAGTGAAGTGCAGAAGAAAAAGGTGAATATTTGTTTATACCATTCTTGGTATGATCTCAAAAATCTGACAACACTTCAGCCTTATTTTTTGAAGTAATGCACCACCATCAGACACACATCTACAGTGCAATTTATACTTGGATTGTTAGCAAGGCTGTAATTTTCCTTTTACTTTCATAAATATTTACAG
Seq C2 exon
GAACTGAAAAACCTGATACCAAAATCAGCAGTGGGAACGTTGTCTTCCAATTCCAGCAATGTCATTCAGTTGATCATTGATGCATACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007145:ENSGALT00000011573:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.2=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTCTATTGCTCATCTGGT
R:
ATTGTATGCATCAATGATCAACTGA
Band lengths:
182-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]