GgaINT0096010 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:302167-303019:-
Coord C1 exon
chr2:302911-303019
Coord A exon
chr2:302281-302910
Coord C2 exon
chr2:302167-302280
Length
630 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCTCTTATCCCTTCAACCAGGCT
3' ss Score
6.59
Exon sequences
Seq C1 exon
CCTGCCCACATCCTGAACCTGCTGCCTTACCCCAGGCTGAATGAAGTGCCCAGGGCTGGACATGAGCTGGGTTCTGCGGGTGCAGAGATCCCCTCTGACCCCTGCACAG
Seq A exon
GTGAGGGCTCAGGGCTGGTGGGGGCTCACCCACAAGGGAGTGGGTTTGGTGCTTCATTTCTGCATTCTCTGGATTGCAGTCAGTGGAGGGGCTTCATCAGCTCTGGAAGGAGCAGAGGGGGGAGCAGAAACCGTACATAAATGTGTGCAAGTGTGGCACCCGGGGAGGAAACCCCCTACCTGCGCTGCAGCCGCTCTGGCAGTGGGGCTCCTCTTGTACAGATGTAGCCTTTTCTTCTGTTTGGGAGGTTTGTGTTGTAATTAATTGCATTTTTGTGGTGGCCTTTGAAATCCTGTCATAAAAGCATCAGGTAAGATCTAAGGATACTTGGGCGAGTTTGTGAAAGACTTTGGAAAGAACATTGTTTTCCGAGGAACGGTGTTCTCTCTCACCTTTCACTGGAGCACACGCTGCCAGGAGGAGGGAGCGTGGAGCTTGTATTTCTTTTTATCTTTAATTATGCTTCAGGCAGCAGAACCTTAAAATAGATGAAAGCGATGCCCTGAGGCTTAGTTAATTTTAGCTTATTTGTGAATTAAAGCAGGCATCTCCAGCATAATGATGTGTATGCCGGATGCGTGTTTTGCAGTGTGACAGTTCATGGTGACCAGCTCTTATCCCTTCAACCAG
Seq C2 exon
GCTACAGATTTTTCAAGCCCGGTGGCTTGTTCGGTATTAAACAGTCGGAGGAGCCGTTCCCTGAAGGCCAGCAGATGCAGGAGGACAGCAAGATCCTCGTGAGCCCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019714:ENSGALT00000031316:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCACATCCTGAACCTG
R:
CTGCACAGGGGCTCACGAG
Band lengths:
222-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]