GgaINT0096286 @ galGal3
Intron Retention
Gene
ENSGALG00000013855 | E1C520_CHICK
Description
NA
Coordinates
chr2:67483545-67484193:+
Coord C1 exon
chr2:67483545-67483690
Coord A exon
chr2:67483691-67484084
Coord C2 exon
chr2:67484085-67484193
Length
394 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCCTATTGCGGTCCCTGCAGTTC
3' ss Score
7.28
Exon sequences
Seq C1 exon
TAAGGCCCGGAGCGGGGCGCGGCCGCTGCAGCGCGGAGAGCGGGAGGTGACGGAGCGGGAGCAGCGCGGCACCGGCAGACACCGGCATCATGCGTGAGATCGTGCACATCCAGGCCGGCCAGTGCGGCAACCAGATCGGCGCTAAG
Seq A exon
GTACGGGCCCCCGCCCCGCCGAGTGCACGGAGATCTACCCTACCGCGTGTTCGCGCGTGCCGGTCTCCGTGCGTCCCAAAGCGGGGTTCTCCCGTCGGGTCCCCACGTCCCCAGGTGTGAGCGGTTCCGCTCGGCTCCTCCTTGCCGTCTGCGCCCGGACGGGCTGCGGTGGCTCCGTGGTGAGGGCGTGGCGCGGCTCCGAGGCGGGGATGGGGGAGTGGGGGGCAAGCGATTCTGCTCGCCGCCGTCTCCGTGGGCTGCGGGGTCCCGGGGCGTCGGTGCCGCACCCCAGCACCGCGGGGCGGCTGCGGATCTCCACGCGCTGCGTGGCGGGGCGGTGGTCGGGGGGGGCGGGGCGGCGGTGACGCCCCTGTCCCTATTGCGGTCCCTGCAG
Seq C2 exon
TTCTGGGAGGTCATCAGCGATGAGCACGGCATCGATCCCACCGGCAGCTACCACGGGGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013855:ENSGALT00000037216:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=PU(7.2=84.2)
A:
NA
C2:
PF0009120=Tubulin=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGAGCGGGAGGTGAC
R:
CTGTGGCCTCATTGTAGTACACG
Band lengths:
222-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]