GgaINT0096338 @ galGal3
Intron Retention
Gene
ENSGALG00000011059 | F1NMG1_CHICK
Description
NA
Coordinates
chr2:32558117-32563595:-
Coord C1 exon
chr2:32563160-32563595
Coord A exon
chr2:32558583-32563159
Coord C2 exon
chr2:32558117-32558582
Length
4577 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GCTGTACTTTTCTCTTCCAGACA
3' ss Score
9.72
Exon sequences
Seq C1 exon
TTGAGTTCCTATTTCGTGAATCCCACTTTCCCCGGGAGCCTGCCCGCTGGCCAGGACTCCTTCCTCGGGCAGATCCCCCTGTACCCGGCGGGCTATGATGCTCTGAGGCATTTTCCGACTTCGTACGGGGCGAGCAGCCTGCAGGACAAGACCTACACCTCACCTTGTTTCTATCAACAGTCCAACACCGTCATTGCTTGCAATCGGGCTTCCTATGAGTACGGAGCCTCCTGTTTCTATTCAGACAAGGAAATTAGTAGCGCCTCTCCCTCCGGCAGTGGCAAGCAGAGGGGACAAGGGGACTATCTGCACTTTTCTCCCGAGCAACAATACAAATCTAACGGCGTGCAAAGCAAAATCGTGAATGACGAAGGCACCGACCGGAAGTACACGAGCCCTGTTTACCCCTGGATGCAGCGGATGAACTCCTGTGCCG
Seq A exon
GTAAGTGACTGAGCGCAACCGAAGGGAAGGGGCACCTGAAGTTTCTTTCCCCCGGATTTCTTTTATTTTTGGTCGGTTGTTTCGGTTGTTTGTTTGAGGTAAACTCGGGCTGCCGGGGGGGCAATGGCTCCGCAGGCACCCGCTCGGATAGGACCTGGCACCCTGGCACAGTGGGAGCAGCGGCCGGGAGCCCAGCCTGGCGGAACGGGCAAAAACAATAATGGCAATAGAAGGGAGGGAGCAAAGCCCTTTTCCCACTCTTCTAAAGCCGTCCCAAAGCTCGGCTCCTTCATTGTCAGAGAGCGATGCAAGGAATATGCCCTCTGCACCGAGGATCCAATGCATTTGTGGCACATTCCTCATCGCCCCCCTCCCCCAGCTCATTAGTATTGGATATTGAGAGCACGTTTCGGGGCCGCACTCCCATGGCATCGCGGATTTTCTCTGCCTTACAAAGTGAACCGCATGGGATCGAACCGTTCTGGCTGGGAGTGGTGCTGGGGAAAGGAGGGGTCCTATCGGGGTGGCACTTATTTTTGATAATCTCATTATCACGTTTGCTTGTATTATTTGCTCATGAGTCCGGGAGTGAGAACCCCTCCCGGGTTTATGCTCATTGGACTGCGGGTTGTATTTCCTTAATTTGGGGAGGGGGGGGGGGGAGTTAAACTTTTAGCAAGACCATTCTGATGTTGATTTGCATTGGAGGGCAATAAATTCCGGAGCAAATGGCAAAGGCTGTTCTATGATCTTTAGGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAACGCTAGAGTTAGAGAAGGAGTTCCATTTTAACAGATACTTAACCCGAAGACGACGCATTGAGATTGCGAACGCTCTCTGCCTTACCGAGCGCCAGATTAAAATATGGTTTCAAAACAGGCGGATGAAATGGAAAAAGGAAAACAAATTCATAAATTCCACCCAGCCCGGCAGCGACGAAACAGAGGAAAAGTCAGGGGAGTAGAACCGTGTTTAATAAACGCTACCAGGCCCGTCCTTAGCGCTCGCTGTTATATTGTTATTTACCTTGTGCTCCTTCTGCTACTAAAATCCCATAGGTTTCTCACAGCCTATTAATCCCCACCGGCTGATGTACCCCCACCGGCAGATGCGATCAGCCGGGACTCGCTCTGAGACACGCACAAGTCCGAGCTTTCGAGCTACGGCCGCGTACGTAGATAAGAACCGCTTCTGCCACGAGTAGATGGCGTCGCTTAAAACATTCCGAGACCCGGCCCAGATCCTAAAATATTTGGGTGTTTATCTGCGTGTGGGAGAGTGTCCCGGGAGTGCCTGTGTGAGAACCGACCCGCGGGGGACTGTTATTATTGTTATTATTGTTGTGGGTGTGTGATTGTGAACGTTCGTACTGTAGAAATACGAGAGATGGTCGAACGTCTCGGGTTTATCTTTTTACCACTCCCGCTACGTCGGGCCGCCTGGATACGACGTGTTTGGGATTTTATGGTCCGTAGGGGAGAGGGGGGAAAAGTTTTACACGAGTATAAGATATTGAAATAGGGAAAAAAAAGCAGAAAAAATCCTTGTAAAAAAATCGTTGTATAAAAACTCGGGTATGAGCTTGCGGATTATGCGAAAATGAATTGCTGGGAGACTTCTGAATGCCACTAAACTGACCCCAATCTGCACTACTGATACCGAGTAAGAGCTCGGTGATAAACTTTAGGGCGAGAGAGAGGAGAGGCTTTGAAGGGGCGAATTTCTGTGGTTCCCGTTGAGCTCGCACTGAGATTTCAGTGAGCTCAGCTCTGCACTGAATTATGGACTTCACTTCTTGGGGATTCGAGGGTTTGGGTCCGTCTCTCTTTCCTTTCTTTCTTTTTTCTTTCTCCCCCCCCCCCCCCCGCTTCTTTCTTTTTTCTTTCCTTCCCATCTTTTGATCTAAAAGGAAACTGTCGGTCATATTAACTCGGGGATATTCTCCCCCGCTTTTGTGGTACCTTAATTTACATCCGCATTTCCTAGCACTGGAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAGAAAAAAAAAGGAAAAAAAAAAAGACATTTTAAAGGGAAATAGCTGCAATAGCACGGTTCCATTTCGGGTTCTGTGTAAGTAGCAGAAGCGCAGCCACTGATATATACGTTCTATGTCTATATGTTGTATTGTTTGCGTGTGAGTGCGCCGGGAGGCTGTGCACAAACCCACTTGTGAGCGCACCGAGGCTCTTTTGTTCGGGAGGCAGCGCAATTTGGGCTATCGCTCTCAACATTTCACAAGCCACAGCTCCAAAAATCCTCCTGCAAAATGGCCACCGTCGGATTTATGGGTTGTTTTTTTTTTTTTTTTTTGCTGGGAGGCAGAAAAGTAGCATCGACACCGACCGCCTGCCATCCGCCCGCTAGCTAGGGAAGCGCCGCACGGCTCTCAGCCCGCAGAGCTACCTGCCGCTGCGGAGCGGCGGGACCCGCTCGCCTCTCGAAACGTCCGCCACGGGAAAACGGTACCAAAAAAAAATACGTGTCGTAACGCGGATCGTGCGAGGGACGTGACCGCCGCCAGCGCCGGGGACGGAACACGCGGCGACCGCGGCCCTCCGCACGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGGGGGGGACGAGGGCAGCTGTCGCCGCCGGGAAGGCGCGGGGAGGAGGGGGGGAGCACCCCCCTGGCCGCGGGGAGCGGGCGGAGGGGCGCGGAGAGCCCCAGCCCCGCTACCTGCCGCGCCCGGCCCGCCGGGGAGCGCCGGGGGTTCGCCGCCTCCCGGAGCTCCGCCGTGGGAACGGGCTGCGCGCCTCCGCCTCGCTCCGCGGCCCCGAGAGCCCGGCGTGCACCGCAGGCGTCCTCCGCAGAGCCGAGCCGGGGGAGGAGAGAGGGGGATTCGCCTCGAAAACGCGCTAAAATCTCCGTTGTAGAAAGAGCGAAACCAAAATCCGAGCGGAAACTTAGCACGGCCGCCAGGTCCCCCTCCCCCAAAGGCTTTTCCGAAGGGGCAGGAGGGGGAAACTTGTTGAGCGTTTCTCCAGCCCGGCAACAAAACCGAGCGGGGCTGAGAATAACGGTCCCGGTGGCTCGGAGCTGCAGGGAGACACGAGGGCTCCACGCCGCTGCTGGGAACCTAAACGCTGTACTTTTCTCTTCCAG
Seq C2 exon
ACAACATAGGGGGACCAGAAGGGAAAAGGGCTCGGACTGCTTACACCCGGTATCAGACCTTGGAGCTGGAAAAGGAATTTCACTTCAATAGATACCTGACCCGCAGAAGAAGGATTGAAATAGCACACGCTCTTTGCCTCTCAGAGAGACAAATAAAGATCTGGTTCCAAAACAGGAGAATGAAATGGAAAAAGGATAATAAGCTGAAAAGTATGAGCATGGCAGCTGCAGGGGGGGCATTCCGTCCCTAAGCGTTTGATCAATTAAAAGTACTGAGCAGTATTAGCTGACCCTGCGTCTCATGTCAGTACTAAGTTGACTTTCTAAAACTTCCTTGTGTTACTTCTGTGAAGAAACCCTGTTCTTGTCGCCCTTATTCATCTTTTAATCATGAGCCTGTTTATTACCATTCTCTCGCGTGTATAAGTAGATCTGCTTTTATCGTACATTTCTTTGTCTTGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011059:ENSGALT00000018011:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]