GgaINT0097522 @ galGal3
Intron Retention
Gene
ENSGALG00000009700 | PDK4
Description
NA
Coordinates
chr2:23871165-23871840:-
Coord C1 exon
chr2:23871742-23871840
Coord A exon
chr2:23871243-23871741
Coord C2 exon
chr2:23871165-23871242
Length
499 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TAATGAAATAAATATTTCAGATG
3' ss Score
4.16
Exon sequences
Seq C1 exon
CCAAAACAGCCCTTCTTTTTGATGATAAATCCAGATCAGGTCACCCGAGGCACATTGGAAGTATTGATCCTTGCTGTGATGTTGTTGAGGTAGTGAATG
Seq A exon
GTAAGTGTTCTGATGTTGTTAACACGATCAGCATTTGGTTGCAGATAGTTTGGGTAGGCAGTGTGTGTAGTGTAAGATGTTGAGTTTCTTGTTTTGGTAGACTGTTTTCAGCTATTTCAACATGAGTTTTTATAGGATATAAAACACCAAAAGTAGCAGTTAAAACAGTAGCAGGCCTAGCAATTGTGAGGTATGGTAGGAGTGAAAATCATCTGTAGTGTTGAAATCAGCACTACCTAATCTTATATAACACCCCAGATGCACCTGTTTTACAGAATCACTGAATTGTACTGAAAACTGTGCTGCTGTAACATCATGTTTAGTCTCAGTTTCAGTGCACACAGTGGATGCAACATTATCATGCCCTGTAAAGCAAAGATTTATAGTCTGTATCACCTTAGCAGCTATCACAGTTAGAAGTTGTATGTTGCCATGCATTAGGATGTTCTACAGTATGTAATGCTCCATTTCACATGCTTTAATGAAATAAATATTTCAG
Seq C2 exon
ATGCTTTTCAAAGTTCCAAGATGCTATGTGACCAGTACTACTTAACGTCTCCAGAACTGAAGCTTAATCAAGTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009700:ENSGALT00000015790:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=PD(13.7=67.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]