GgaINT0097523 @ galGal3
Intron Retention
Gene
ENSGALG00000009700 | PDK4
Description
NA
Coordinates
chr2:23870505-23871242:-
Coord C1 exon
chr2:23871165-23871242
Coord A exon
chr2:23870582-23871164
Coord C2 exon
chr2:23870505-23870581
Length
583 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTGTCTTTCTCTTCCTCTAGGAA
3' ss Score
13.48
Exon sequences
Seq C1 exon
ATGCTTTTCAAAGTTCCAAGATGCTATGTGACCAGTACTACTTAACGTCTCCAGAACTGAAGCTTAATCAAGTAAATG
Seq A exon
GTAAGAAGAGGGCTTATGCCTTTCTTGTTATTGTAGCCAAATCAATGACTTTAATGAAACAAAAGGTTCTCATTTCTATAGCCATAATGGTACATGCCTTTTGACTTGTCTTGTGGTATTTCCTCTGCACTTTGTTAGTCACCTCACTTAAGATCTTGGGTCAGATGTCACTGCATCTTAAACAGGAGACTTCTTGAGGTTATATTTACAAATTTGAGTACAAGGCTAGTCTGTACTTAAAAATAAAACAAGTTGTAAGAGAGGAGCTCTGTATCTGGGGTAGGAAAAGTCTGTCTACTGACTGAAAAACACAAGTTCTCGTCTAAGCTGCCAGCATGTGGGATCTTGAGCAGGTGTCTTAATCTCTAAAATCCTTTGCATGTGGAATGGAATTAATAATTATTAAGCTGGTGATAATTGTTACCTAAACAAAATTGTTCAGTTCAGAGGAAACACCCAAAACTTAGACATCTTGTTTGTTTTAGCAAATAGCATGCTTGTTGTAAAATCAGGATGCAGTACCAAAGACAAATAAACAGAACTATCCCCCTCCTAAGTCTTGTTTGTCTTTCTCTTCCTCTAG
Seq C2 exon
GAAAATTTCCAGGAGAGCCAATTAATATTGTCTATGTTCCATCTCATCTTTTTCACATGCTTTTTGAGCTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009700:ENSGALT00000015790:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0251821=HATPase_c=PU(11.3=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]