GgaINT0097525 @ galGal4
Intron Retention
Gene
ENSGALG00000009700 | PDK4
Description
pyruvate dehydrogenase kinase, isozyme 4 [Source:RefSeq peptide;Acc:NP_001186838]
Coordinates
chr2:24037780-24038272:-
Coord C1 exon
chr2:24038174-24038272
Coord A exon
chr2:24037891-24038173
Coord C2 exon
chr2:24037780-24037890
Length
283 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTCTTTTTCTTTAAATCAGATC
3' ss Score
8.88
Exon sequences
Seq C1 exon
AATTCAATGAGGGCAACAGTTGAATTTCAAGAGAATAGTCCTTCCCTCTCTCCAGTTGAAGTAACAGTTGTTCTGGGACAAGAAGACCTGGCCATTAAG
Seq A exon
GTATCTTGTTGGTCATCTATTATATGGCCTTAACATAATCCTTATGATTGCATGTGCTGCAGCAAATTCCATTAGAACTTGCCACAAGTTCTGTGACAACAGATTAAATACATATGAGCTTTCTGTTGATAGATAATTGCTCTAGATGTATGCTAATTGAAAAATAATATTCTGTGAAACAAACAGCAGTTATTATTGTTGGAAGGATTTGTTAAGTACCAGTACTTTAAATATTGGGTTTAGTGCATATGATCCTAGTTAACTTTCTTTTTCTTTAAATCAG
Seq C2 exon
ATCTCTGACAGGGGAGGTGGTGTTCCAGTAAGGAAAATTGAGCAGCTGTTTAGCTACATGTATTCCACAGCACCAAGGCCAAGGATGGATGATGGTCGACAGACTCCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009700:ENSGALT00000015790:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(25.6=100)
A:
NA
C2:
PF0251821=HATPase_c=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGAGGGCAACAGTTGAA
R:
AGAGGAGTCTGTCGACCATCA
Band lengths:
206-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]