GgaINT0097800 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31593764-31596740:-
Coord C1 exon
chr2:31596633-31596740
Coord A exon
chr2:31593899-31596632
Coord C2 exon
chr2:31593764-31593898
Length
2734 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTTGTATTTCTTTTAAACAGGAA
3' ss Score
9.81
Exon sequences
Seq C1 exon
GCAATAGCACAAAACACAGATCTAAAAGACCGGTTACGCAGAATACATGCCGAATCTATGATCCTTGATTCAGCATCTAATGCAAAATCAAGTCCAGATTTGGTGAAG
Seq A exon
GTGGGTATGGATTTCCTCTTTCAGCGATGTCTTTTCCTCCAGCTCCTACATCTAGATGGTGTTACATCTTGTCCTGTTCTTCGTGTCTTCCCTACAGTGTATTGTGTTAGCAAAATGAGTCCGCTTTTGTGATTATGAATCATTTCTGGTGATGCATTGTGTTATATTTAATTTCCAAGATTTTCCTTGTGAGCAGTTTTCCTGAGCACACCACCATTGCTTTTGCTACTGGCTCCTGGTATTCTCCCTCACCTCCTGCCCACTTCCCATTCAGCATGAACAAAGCTGTCTTGTCACCTTGCTGCCAGTGGTTTTCTCTCCTTGCAATCCTCTGTTAACTTTCATGCCTGTCTGAATTCTGTTAGCCCAAAACACTAACTACTGATGTGACTGATTTAAGGTTTAGAGCTGTTATTAGACTTTTCATGAAAGAATCAAAGAAATGAAATATATAGCATCTTCAGCCATTTAGTTCTGTGTGTTTGAAGACAGGGAGTTTTCTGCATATCCGGATAGCCAGTTTGAGATACACTGAAGTACTGACAGTTTTTTGGCTCACTTCAGAATGCATATGAATATGGTGTATTTATAGATCACAGGACCTAGATGATTAAGATTCCAGTAAGGGAAGCAAGAACTGTTATTTCTGATGGATTTTCCTACGTGGTAACTGATACGGAAACTTCTGCTGTGCTTGTATAATAAATCCTGCATTAAAACTTGAATGGAAGTAGTGTTGGGGGTTTTATATAACATACTATTTCCTTTCATTTTTAAAGGCAGTTTAGTCATTCAGTCTGTTCATTTCTATTTTAGTTCCATTTTAGAAGTACTGATGTTGGTCATATTTAGCCCCCCCCTTTTTTTTTTTAAAGGTAATTGATCAATGCAATGCCTTTTGCTTTTAATCCCATAAGATTTCTGAATAGCACTGCTATATAGAGAAGCATTAATGAATGAGTACATTGGTTTTTAATTTCAAGAGTAATCTTCCTGTTTAGTGGAGGATTTTGTAAAGACATAGGTTATTTCTCCAACAGGGTGTATGCATTGCATATATATGTGACAAAATTAGCTTTCAAAAATGTCCTTTAGGGCATTTGTTGATGATTCCCTCTGTCAGAGTTTGGAATGGAACTTATAGACAAAATCATTCATACTGGAGAATTTTCATCTTAGATTTGTCTGAGGACTGGGATACAGTACTGCTGCAGTGAGGTCACTGCACAAAGCTTGGCTCTAGATGATATATCAGGTCCTATAATAGACCTCTGAAAACTGAAGTGGTATTAACTAGTTTTTCAAGCCTTTGCATAAAATAAACATTTAGTTTATATTTTGAGTGGTTTATGGTGTAGTTTATCATGCCACAATTGGAACATGAACAAAGTGAAGCTCTCATGTGATTAAATATAAAAACCAACTGTTCTCTTAGAGCCTCTTCTGCTCATTTTGCTTCTGAGATTCAATGTAGAGTTGGAAACAATCCCAGTAGCACTGCTCATGCACATAGGAAGTTTTTTTTGACTTGCAGGCCAATGTAACTGCCTTCCCCCAGAAGAGTCAATTTTGAGGTTACTTCTTTCTTGCAGCTTTATTGGGATTATACAATTAAAAAAGGAGAAATCTTTTGTAAGTAACAAACCAAACTGTTATCAATGTCCCCATTATCAGCACACAGTGAATAACATTCTATACTGTAGTAAAACGTACCAGCAGAAAAGCCTCAAAAGATTTGTCAGTTTGATTACAGACTTACCAGATTACTCATAAAGTGAGTTCTGAAGGTAAAGCTTCTCAATTTTTTTTCTCATTTTGCAATTCCTACAAAATTATGACAGCAAGGGCAGCCATGATTATAAGTTAGGAATGCATCTCATGCAGAAAGAAGCTTGAGAGCAGCTGACATCCTGATTTGGACCAGCCAGCCCTATTCCTTAGTAGGGATGGAGTTAAGAGGGAACTACCAATACTCATTGGGAGTCCCACCTTTGCTAGACTACATTTGGCAACTCTGCTTATGCCAACTACCTATAGAGAGAACATGGGGTTTCTGCAGGTGGAGGTCATGAAATCTGCACAGCATTCAAACAGGACTGCAGCAGCAAAAACAATATCATTGATGTGGCTTTGATGATAGGCTGACTTCTGTTGACACACAGTTCTTGGGGGTGAATATGAAGCTTTCCAAAGCACAGCATGGAAAATAGCCTAGTGGAGATAGTTAGGAAAACACTGCTATTGTATAGGAAATAACTTTGCCCCTCTGAATTTTGTACGATACTGCTTGACCAGATTTGCATTAAGCAAGGACTGGGAAAAGAGAAGACTTGTGTGTTTGTTAAGATCACCAAAGAATGGGGATCCAGTATGTAGTAAAAAAAAGTTTGAATTTTCTTCTTTGTGGGGCTTTCTTAGTGATTTGCTTGCATACATATCTGGCTAAACCTCTCAAATATCAATGCAGTTTTACGTTTTTTTCTCAGAGGAAATGGTACATGGCACAGTATAAACCAATCTACTGAATTGTACATTTTTTTCTTCTTTTTAGTCTGTTTTCCTTTGGTTTTAATACCCTCATCAGAACATGCTACCTTTCACTAAATTGGAAAAGGAGCATGTGCGGTCTTCTCCCAAGTGTTTTACAACCCTTTAACTTATGTGACTGGATTTGTATGCATGAATGTTATTTGTAGTATTTTTCTCCCCAAAACTTTGTATTTCTTTTAAACAG
Seq C2 exon
GAAAATTCAAGAGAAGAAAACAGAGGTCTGGTTCACCAGATCTCCAATGAAAGCAGACTGTCTATTGCTGACTCTCTCACAGAATTTTTTGATGCACAGGAAGTCCTACTGTCTGCTAGCTCTTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]