GgaINT0097888 @ galGal4
Intron Retention
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19031006-19034353:-
Coord C1 exon
chr2:19034231-19034353
Coord A exon
chr2:19031143-19034230
Coord C2 exon
chr2:19031006-19031142
Length
3088 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TATTTCTTTTCATTCTCTAGAAA
3' ss Score
9.03
Exon sequences
Seq C1 exon
ACAAAACCTGTTGCATTTGCAGTTCGGACAAATGTCGGTTATAGTGCAGCTCATGATGATGATGTTCCAGTCCCAGGCATGGCCATCTCATTTGAAGCTAAAGATTTTCTTCACGTTAAAGAA
Seq A exon
GTAAGTAAAAATGAAGTAGTAAGTAGAGACCCTCTTTAAGGGTTAAAGCACCCTGCTGCTCTGTTCTGAATTGTTTCTTGATTTTATGAGATTTCTCAGCTTCTGATCATATTCTGTGTTCTGCGACATATCTTTCACCCATTTTAGATTATCTGGCTTCTTAATGCTGTGCAGCAAAATCCCTCAGTTGTTACAACTGATGATGCATTTTTTTTGCTAGGTGCTTTGTGGAGGAAGCAAGAAGCTTTCCCTACTACACAAGTAGAAATATAAGTGGACAAAGAGTAAGGAAACACAGGAATTAGACTTTATTGTGATGACTAGTGATCAGCATTTCCCATATATTTGAAACACATTTAAAAAAGAGATAATTTGTATATGGCGAAGAAAATGTCTTTCAAGCCTGATGATAGTGCAGAAGAATTGCTCTGCTCTCTCTTGTGACAAAAGTAGGGATGAGCTGGCACAGAGTCTTTGGAAAAAAAAACCAACCTATCAGCATCTTTCAGCGAGTTTGGAAAAGTATGACTCAGTTTGGTTAGATTTCATATGATTACCCATTCCATTTGTATTTCAAATGATCTGGTAACCTCAGACTTCACATTGAGTCTTTCCTGTTTCCAGGGGACTAGAAACAGTGTTAAGTATTTTTTTGTCTGATAGAATTTATGCTTTTTCATCACAGCTGAACTTAGCCTTGAGTGTCAAAATACATAGGAAATAATGAGAAAGAAAGAATTGTCCAAACTTTACTGAAATGTCTTGAAAAGAAACTTAGCTCAGATGAGATATTATATTGCCTGTGGATGCATGTAGCGGGGAGGAATGGAAAACAAGATTAAAATGCAGTTCTTTTTGCTGCCTCAGGTATCATACAACAAGAACTCTGCACTAATTGCAGAACTGTTTTGCTCTCTGAGCCACTCAGGGAAGCTGACCATCCACCTGTGCTGGAATGGAGCAGGGATGCAGGTCAGGGTTGGGATCTCGGTGGCCTTGCTGCTCCCACATCTGGCAGCAGCTGCTGCTGGGCAGACCAAACCTCCTCAGACAAGTCCTGAGCCATATAATTCCTGTCCTGACTGTCTCCTTTGTGGCTGTGGCCCTGGCCTGCTCTCTCTCCAGGGCTCTGTAATCCACTGCATACTGCTCCTTCACTCAGCTCTCCAGTTTATACTGCTGAGAGGGCTCAAGCAAGGAAAACTTAAATTCAAAATCTACTTGGACAATGGTGAGAAAGACTGCACTGATTATATGTGAGGGAAATTTGTTTTTATTATTAAGTTAGATTCATTAAAACTTAGTGCATGTACAGATGACAGATTCCTTCTACTGCATCACAGACTCTTCTGAATCTTTCAGGGCTTAAATGCATGGCCATAATTTTGCTTTGCATTTAATTCCTCTTTGTGTTTTGCCTGGCTTTTCAAGCACAGGTGTCCTTACAGAGAATCATTCACCTCAGCACCTTGAGAGCTGGACGTATCACTAATCACTGCCAACATTTCCACTATTGCCTTTTAAAATTCAGAAGTATTGTGTATTCACGGGGTTGGAACAAAATGATCTTTGAGGTCCCTTTCAACACAAGTAGTTCTGTGATTCTACGTATAGTACTATTTTTTCATAAAACTACCTTATCCTCCTTTTTGTTTACCAACAAAACTCTTAGCTTCCAGACTTTACAAGAGTGAATTCCTCATGTTTTTATTTTTGCAAGAAAAAAATTCACATGGATTAAATATTTCTACTAAGTATATTGAAACTGGTTTTGTTGAGTAGTGGTTTGTTGCACTATGGGACAGGATAAATGAATACTGTCTGTTCAGATTTTAATTTAATGATGTTTTTTTTTAATTATATCTTCCATTTAACAAGCTAAATGATACTATTTTTGCAGACTTCATGTAGAACACAATGCAGATCTACTTAATGGCAACCTCTCTGGGCTTAATGACTGGTCTTCCTCCACATGTCTTGTCCTACATATTTGAAATGCTCATGCTTATCTTTAATTAGAGTTTTTCAGTGAAAATTTACAATTTTAATAAGATGTTAGAACTAAGACAACTTTGATAAATTGCTCTTCTGGTGTAGCTTCCTATTAAACACTGGTATCCTTACTCATTAAAGCACCGCATTGGATGAATAAGATATTATACTGCCAGTTATATTTTATGAGCTTAAAATTGTACTTATTTTAACCTTTATTTTTTGTTAGCATTGTAAAATTTTCTTCAGGCATCACAGCATACCTATACTAACCAGGTTTTATGTCGTTGATCTGCCAGCATCGTATACTTAGTAAAATTATTTGTATTTTATGTGAGCCCACACATTTAACATATTTTACACCTAACTATGCACTTGTTGATTATTATTGTTAATTCTTAAATATGTACTATTTAATATTTACTATAGCTATTTTCATAACTCCAGATTTAGAAAAGCAATTTTTTTTTCCTGTTCAGATGTCCATTCCTTGTGGATTTATCACTTTCTGCTTAACATACAGATCACATGAGCTATAGGTAGAGCATATCTGGGAAGTGGAATGTAGTCATATTTCATAAGGTATTAGTGAGTTAAGAGAAGCAGGGGAGTTTAAGATATGGTATTTTTTATTCTAAATAGAGAACTTGGTTTAATAGAATAAGAAAAATCGTTTTTTACAGAGCTGTAAAAATTGTTGCAGTGAATAAGAGCAGATCAGAAGAAATCTCTGGCATACACTGAGGAGAGGTATCAAGGTAGAGCAAAAGCAACTCATGTATGAAGAGCTAAGGCTGCAAAGCAGAAAGAAAGACGGTGAAATGGGAGGATAAAACAGCCAGGGAGAATCATGCTGTTTTGAGAGGGAAGGTTTCTGCTTAAGTACTGCAGCATTTTAATAATTTGCAAGGTATAATTATTTTTATGCATTTCTGAACATTACCACTATTCTTCATTGCCATAATAACATAGTACAATGATTAACTGCAGGGAAGAATTACATAAAATGACTTAGCTGAGAGTCAAAAATATTAACAAAATGATCACAAATACAGTAATTTCATAGTAGAAGACTTTATTTCTTTTCATTCTCTAG
Seq C2 exon
AAATTTAACAATGACTGGTGGATAGGACGGTTGGTAAAAGAAGGCTGTGAAATAGGATTCATACCAAGCCCAGTCAAACTAGAAAACATGAGGCTGCAGCATGAACAGAAGGCAAAGCAAGGGAAATTCTACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591:ENSGALT00000013988:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.391
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
A:
NA
C2:
PF0001823=SH3_1=PD(51.2=47.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]