GgaINT0098635 @ galGal3
Intron Retention
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106320326-106320809:+
Coord C1 exon
chr2:106320326-106320378
Coord A exon
chr2:106320379-106320703
Coord C2 exon
chr2:106320704-106320809
Length
325 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTACATTATTTTCTTTGTAGGAA
3' ss Score
9.58
Exon sequences
Seq C1 exon
CATGCCAGTGCGATGTGAGTGGAACACTAAGTGGAGTTGGAGAATGTCAGCAG
Seq A exon
GTAAAGTGAAATTCTAAGGAAGGCGTTAAATCGACAATTACTATAAAGATAAAATATTATAACACACCATAAAGTAGAATTGCTTTTACACATAAAGTGGCAAGTGACATCATAGCTCTAAAAGTTTTTAATCATCTTAAACATAGGGATTTTCTCATCTGTTTATTAAATGTGATGAATAACAAAAGTTATGTCTGGATAATACTTGTTTGTTGAGATTAGAGCAATTTTTATTCTTCACAATTACAGGGAATTCAAAGTATTGAAAGAATGAAGCTCTGGAAAAGGTGCTGAAACATTTTTGATTACATTATTTTCTTTGTAG
Seq C2 exon
GAAACTGGACGTTGCTATTGCAAATCTAATGTGTGTGGAGATTTCTGTAACACCTGTGAAGCTGGTTATTATGCTCTTGAAAACAAAAATTATTTTGGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056:ENSGALT00000024287:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(31.4=88.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(64.7=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]