GgaINT0098649 @ galGal4
Intron Retention
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102843560-102844421:+
Coord C1 exon
chr2:102843560-102843675
Coord A exon
chr2:102843676-102844209
Coord C2 exon
chr2:102844210-102844421
Length
534 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
3' ss Seq
TTATATTTCAATTTAAACAGCCC
3' ss Score
6.53
Exon sequences
Seq C1 exon
GAAAGTGTCTTAGTTGTTCCAGCAGACAGCTACAGTTACAAAATTCTTGACAAAAAGACTGTGGACAAGTCATTTGATTTTATCACCCAATGTGGAGGGAACAGTTTTCACATTGA
Seq A exon
GTAAGCATCACTTCCTAAATATTGGGCATTTGACAGCAAGCTGGTATTTAATATTATTTTCACTTCATATTAAAGAAAAATGAATAAAAACTTCATCCCTGTGCTATGTTAAAATGCTTTTCATGGCTTCTGCTGGCCCATTAATATTGCATGAGTCATTTTTCCATGACTTTCTGTTGTAAATGAAATGTAAAGGTAGCTTTATTGCTCACAGGACGGAAGAGGAAAATCTATGTCATCTTTCTGTCTTTGGTATTTCCATCTTTGGTATTTTGCTTGGCCTGCTGAACTAATATGACTAATATACCTACTTTCTTTGAAAAAAATCTCTTACCTACTCTTACTTACCTATCTACCTAACAATCAAAACCATTTACTACTAATATAATTAATGTAAGTATGTCCTTGCATGCCATCCTTGTTTCATATAATTGTTTGAAAGATAGAACCGTAATTTACAGAACCACTGCAAAGTATTCTCATAGCAATTTCCTAGTGGCAGTACTGACAAAATTTATATTTCAATTTAAACAG
Seq C2 exon
CCCAGAAAGATCGTCAGCCTTTTGTAAGGATTCTGCAAGATCACTTGTGGCTTTCTACAACAATGGAGCAGTGCCATGTAATTGCCATAGTGAAGGTTCCATGAGCCCCACTTGCAGCCCTCTGGGAGGACAGTGTATTTGCAGACCTAATGTCATCGGGCGTCAGTGCAGCAGATGCCAAACTGGCTACTATGGATTTCCATCCTGCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056:ENSGALT00000024287:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGTCTTAGTTGTTCCAGCA
R:
TGGAAATCCATAGTAGCCAGTTTGG
Band lengths:
318-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]