GgaINT0098823 @ galGal4
Intron Retention
Gene
ENSGALG00000008654 | STAM
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr2:19534939-19535192:-
Coord C1 exon
chr2:19535117-19535192
Coord A exon
chr2:19535035-19535116
Coord C2 exon
chr2:19534939-19535034
Length
82 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
TTTAATCTTTCTTTCTTTAGCTT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GCCTAAGGATTGTCTTCGTTCCATTATGAAGAGAGTGAACCATAAGGATCCCCATGTTGCTATGCAGGCTTTAACA
Seq A exon
GTAGGTTACTTTTAATGTAGTCCTTTCCTAAAAAGCAATATTACATGAAATCTTCTCTGAGTTTTAATCTTTCTTTCTTTAG
Seq C2 exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATCTTTCATTTAGAGGTCTGTTCAAGAGACTTTGCCAGTGAAGTAAGCAATGTGTTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654:ENSGALT00000014097:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.8=100)
A:
NA
C2:
PF0079014=VHS=FE(25.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAAGGATTGTCTTCGTTCCA
R:
TCAACACATTGCTTACTTCACTGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]