GgaINT0099973 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BVL4]
Coordinates
chr2:502880-504322:-
Coord C1 exon
chr2:504105-504322
Coord A exon
chr2:503007-504104
Coord C2 exon
chr2:502880-503006
Length
1098 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCGG
5' ss Score
6.54
3' ss Seq
GCCCAGCCCTCTGCCCACAGGTG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GGGCGCTGTCTGCACGAGGCCAGCGGTGGGAGCGATGGGGGAGGGCCGGCGCTGGCGGGGTGGGCTGTCCCCGTCCGTCCCGGTCCGTCCCGTCCCGTCCGGTGTCGGCGCGGCTGATGGAGGAGCTGTACGCTCGCATCGAGGCCCTGGAGCGGCGGCTGGAGCGGGCGGAGGAGGCGCTGAGGGGCTGGGAAGCCTGGGGGCTGCGGTTGCCCTCG
Seq A exon
GTGCGGCCCTTCTCGGGGGGAGGGGGGAAGGGGAGAGGTGAGGGGGTTGTCGTGGGCCTGGGGGCTGCTTGTGGGGCCGGCGGGGGGGCCTGGGGGTCAGCGTGGGAACTCCTTGTGGGGTTGCTGGGGGTCTGGCTGGAAGCTGCTTAGGGGGCCCTCAGGGTGTGAAGGGAGCGTCTGTGGGGCTGGGGGTCGCTGATGGCGTCGAGGGCTGAAGGGATCGTTCCTGGACTGGGTGTCTGCATGGAGGGCGCTGATGGTGCTGCTGGGGGGGGTGGAGGGGCGCGTGTGGGGGCAGGGGTGAACGTGGGGGCTCTGTTTGAGGCTCTTGGGGGGTGGGGGATTGAGCTGGGAGCTGCTTGTTGGGTGTGAGGGGTGTTCGGGGGACTGGGGTCGGTCCTGGGGTCATTATGGGGCTGTTTTGAGGCTGGGAGTCAGGCTGGGGGCTGTTATGGGGCCTTTGTTTGGCTGCGGGTCAGCCTGGGGGCTGAGACGATGCTTGTGGGGCAGGGGATCAACATAGGGCTTCCTTATGGGGGTCTGGGTGTCAGGCTGGGGTCCATTTGTGGGGCCATGGGGGGCTGAGAGGTTGTCTGTGGGGCTGTAAGGCAGCCTGGCAGTTACTGATGGGGACTTTGTGGAGCTGAAGCTGGGGGATGCTTTTTTAGCAGTTTGGGAGCTGAGGGGTCATTTGGTGGTCTGGGTGTGAAGCTGGGGGCTGCTTATAGGGCCATTAGGGGGCTGGGGGTGTCTGGGGCTGGTGCTGAGCCATGGGGTTCCTGCACAAGGATTTTGGGAGAAGGGTGATGCAGGCTGGATTTAGGTTATGGGGTCAATTATGGGCCACTGAAGGAGTAAGAAGTTATTTGGGAGCAGTGCAGTAGCCTATGGGGTGCATATGGGGCTACTGAGAGGTTGAATGGGCTGATGGGGAGAAGAAGGGGCTGAGAGTGAGCCTGGAGGTCGCTTGTGGGCCCATTAGGAAGTGCTTAAGGGGCCTTTTGCGTGAATCTGCAGGGCTGCTAATGGGGCTCTTGGGGTCTGGGAGCTGGCTGGGAGGAGCTGACAGATGCACTGAGCCCAGCCCTCTGCCCACAG
Seq C2 exon
GTGCCGGTGACTTTCAAGGATGTCTTTGTGGAGTTCAGCGGGGACGAGTGGGCCCTCCTGGATGATGAGCAGAAGGAGCTGCATCGGAGCGTGATGCAGAGCAACTGTGAAATGCTGTTGTCCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019710:ENSGALT00000007819:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTGCACGAGGCCAG
R:
ACAGGGACAACAGCATTTCACA
Band lengths:
340-1438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]