GgaINT0102082 @ galGal3
Intron Retention
Gene
ENSGALG00000016411 | COL14A1
Description
NA
Coordinates
chr2:142505926-142507319:+
Coord C1 exon
chr2:142505926-142505933
Coord A exon
chr2:142505934-142507229
Coord C2 exon
chr2:142507230-142507319
Length
1296 bp
Sequences
Splice sites
5' ss Seq
AGAGTCCAC
5' ss Score
-20.8
3' ss Seq
TACCATCCCCATACTCCCAGTCC
3' ss Score
5.02
Exon sequences
Seq C1 exon
TGACCAGA
Seq A exon
GTCCACCATCTGATTTGGGCCTGTGAATGGCTGAAGTGTATTGGGTTTTGTCTTATATGTGTGCGTGTAACTGTGCGAGCCTGCTCCACCTGAATGTTCTGTGTGTTGAATCCCACCTCCTAATGTTTACGGCAGCAGAGCTGCACATCTGTAGTTTTTAAAACATGTTTCTCCACTTCCTCTTCTGTGTGCCTCTGAATGGCATGAGAGCATGAACATTACTAAACCTGCCCTAGTGTAACCTGGAACAGGGATGCACGTGTCCGTCATTAACAAGTGAAGCAATCTGGAGAAAATGGCTCTTTCTCTATCTTCCATGTATTCTACTTTCCTTGTTTGTAGCACAGAGGCCATGGGAGGAAGTTAACACAGTTATCAAAAGTGATGTTGTCCAGCCTAAAATTGAAATTTATTTTAGCAAGTTACTAGTTACTACAAACGTTATGCATAAGGCTTATTTGTTTGATGTTTACAGTTTAATCTGCCCGTGAAGTGATTTGTATGTTTTACTTATGTGAATGTTTTTGTTGTCGTCTCTTCCTATCCTCTTTCCTCACTTCCCTTCCCTGTTGTTCATTTCCTGTTTTAAGGCCCAATCCCTTACAATGGCTACCAATCCAGAAGGTGAAAGACTCATTCTGGTTCAGTTCTCATTTGGCTGAAGGTCAGATACGGATGCTGAACTGCTCTATGCTTTCCATCAACGATATTGACTACCACTAATGAACTTGCTAGCTGCTGTACATGCACATAGCTTCCTTGCACTGCTAAAAGTTATTGTCTGACCCATTAATCATATATTCCAGCCCATAATTGGAATTAGCTAAAGCAGGCGGATTGTGCAGTGTATAATAAGCACAGTATTACAACTGGACATAAGACAAATTCTGGTGGTGGTTTCCAACTAACTTGGCTGTCTGTTGGTGGGTTTCCAATTGCTCCAGCTTATTAATTTTGTTAAATGTTTTCACTGTTCCTTCATGTGAATAAAAAAATGTGTATTTAAAGATTATATATATACACACACACACTCTCTATATATAAAAGGTATATATATATGTCAGTTTGCTAATGAACGCTTCAATTTTCTGCTCCCCTTCTCCTGTGTTAACCATATGAATACTCTTGGTGGTGGTGGGTTAAGGTGGATACGGTGAGCCAACTGATCAAGACATCCCAGTAGTGCAGTTGCCACATAACTCCTACCAAATCTATGACCCCGAGGACCTTTATGATGGTGAGCAACAGCCGTACGTAGTTCACGGGTCCTACCCTTTACCATCCCCATACTCCCAG
Seq C2 exon
TCCTCCTATCCATCACCTCATCTTGCTCAACCAGAGTTTACTCCAGTTCGAGAAGAGATGGAAGCCGTTGAGCTGAGATCCCCCGGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411:ENSGALT00000026472:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]