GgaINT0102492 @ galGal3
Intron Retention
Gene
ENSGALG00000011053 | Q804C5_CHICK
Description
NA
Coordinates
chr2:32515782-32519213:-
Coord C1 exon
chr2:32518832-32519213
Coord A exon
chr2:32515814-32518831
Coord C2 exon
chr2:32515782-32515813
Length
3018 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GCGCCGCGGGGACCCGGCAGATG
3' ss Score
1.39
Exon sequences
Seq C1 exon
ATGAATTTCGAATTCGAGCGAGAGATCGGTTTTATCAATAGTCAGCCATCGCTTGCTGAGTGCCTGACATCTTTTCCCCCTGTCGGTGATACATTTCAAAGTTCATCAATCAAGAACTCGACGCTTTCACACTCGACACTGATTCCTCCTCCTTTCGAGCAGACCATCCCCAGCCTGAACCCCGGCGGCCACCCTCGCCACAGCGGCGGCGGCCGCCCCAAGGCGAGCCCCCGCGCCCGCAGCGGCAGCCCGGGCCCCGCCGGCGCCCCGCCGCCCCCGGAGTACCCCTGGATGAAAGAGAAAAAGGCGTCCAAGCGATCCTCGCTGCCGCCCGCCTCGGCCTCCGCCTCAGCCGCCGGACCCGCCTGCCTCAGCCACAAAG
Seq A exon
GTCAGTCCCGGGGCTCGCCGCCCCCCGGCCGCCCGCAGCCCCCGCTCGGACGGGGCTCCGCGCGGAGCCCAACTTTCCCGAGTCGCCCCAACGCGGGATGATTTATTTGAGTTGGAGCTGACCTCTCTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGAGCCGCCGAGGGGCAGCGATCGCCCCCCCACTTAAAGCCCCCGCCCCCCACGCACAGAACCGGCAGCGAACCTTAAAAACATCGCGAGAGAGACAATGCAACAAAAGGGATGGGGGCTGCTCCCAACAATGGCACAGAAAAGGGGGCGGGGAAAAAGGATTACGTGATGCTGGAGGCTGCAAGAGAGGTGCTGTAATTTGCTCCATTTGCAGAGAAATGCATATTTTTTTCTCCGAAGGCTGCTGTTGTAAAAATAAAAGGCACGGAAAGGATGCCAGCTCTTTTATTGGTAAACAGTCCCAGCGGCCCTCCTTCTTGCTCTGCCTTATGCTGTATTTATCACAACAGGTTTACGGGAATGAAACGAATGTGCTTCCGTCCCTTACCGCAGCCCACACTGATGCGGTATGATGCCATAAACGCCCCCGGAGTGCCGTTGCTGTTGCTCTCCCCACGACCCCTCCTCCCCCCCAGAGTTTAAGAAACGGAACCTTTCCGGAGGGCCCTCAGCCACCCGTGCCTGCGCGGTAAATCAGAATAAACAGAAATCCTAAGAGCGGCCCTTCAGCTTTTGCTGCCCGTCGAGAGGCCTTGGGGATGGCGTGGGGTAAGGGCTGACCTAAGAGCAGCGGGAGAGCCCGCACCTCGGGGAGGTTGTTGTGGTTCGGAGGGGAGGGAGGAGCTTGCGGGTGAGTGAGTGTGTGAGTGTGTTGGTGAGCAGGGAGAGGTGGCAGGGCAGAGGGAAGCCTTTGGGATTTCAAAGCAAGCAGCAGCGAGCACACAACGATGGAAGAGACGGCCGGGAGTGCACCTGCAGCGGCGTAGGAGGCGGCTCCTCCCGGGGCCGGTGCTGAGGAGCATTGAGTGCTGGTGCCAGCCCCTCTCCCTGAAGATAGATGAGAGCCCTGGGACGGATGGATGCCCGCTCTTTGCATCCCCTTTCTCTTTCCGCATATGTAAACAGAATATGAGGTCGCAACCCGCGTCCCATCGCCCCCCGTCCTTTTCTTTCCACGGACCCTTATATGTATTTTATTTACCCGTGGATGGGGGTGGGGAAGGGCAAGCTTAAACCGATGCTCGGCGCGGTTCCCAAGGGTCCTGGGGCCGTCTCTGCCACCGGCCATCTGCCACCTCCCACCACTGCCGGCCTGGGCGGTGGCGAAGCGCGGGGACAAAAGGGTCGGTCTGAGGGTCCTGCGTCTCCTGGCTCTCTCCGGGCCCTGCCCCGGGCCGCCTCCCCGGGCTGCGACCTGCGGCAAGCTGGGCACCCTTCCCCCGCCCGGCCCGCCGATATCCGGGTGGCAGCGCGCCGCGGGGACCCGGCAG
Seq C2 exon
ATGGGTTGCGGAGCCCGGCGGGCCTCCGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011053:ENSGALT00000018004:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]