GgaINT0102643 @ galGal3
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17850523-17852049:-
Coord C1 exon
chr2:17851932-17852049
Coord A exon
chr2:17850596-17851931
Coord C2 exon
chr2:17850523-17850595
Length
1336 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTGAAATATTTACACTGCAGATC
3' ss Score
5.78
Exon sequences
Seq C1 exon
GCAAACACCCTACCTGGATCATCTCTCAGTCTGCCTCCATCCCATATGTATGGCAATAGGCTGAATCCAAATTCAGCAATGGCAGCACTTATAGCTCAGTCTGACAACAGCCAAGCAG
Seq A exon
GTAAGCTACCCGGTGGTGGTGAAAACACTGACACTTCACAAACTGAAGAAACTCGAGTATTTGTAAGAAGATCGTAAGGTTTTATTCTTGAACTCCGCTCAGCATTTGGTTATTAAGAGTCTGTTTAAAGTTGTTAGGCGTTGCGAGTAAAGTCTTGGTAGGTCAGAACAGCTTTTTTTTTTTTTTTTTTTCCCCAACTTTCTGAAATGTAAATGTTTAAGCAGAGCCATCAGCAGGCAGGAATGCAACAATGTCTCCTGTGACTTCGGTGATTGATGTGTTCAGTTCTTAGCTCTTTGCAATGAGAGCAACACAGCTCTGGGTTTTGTCGTGAATAGTTTAAACCTCGATTTGCATAATTCATGAAATTGCATTACATACAACTTGGTGTGAAAGAGATCCCGTTAGAGAACTTCTACAGCATTCAGTAATCTTGTGAATATTTACCAATTGACATTTTTGTAACATTCGGGCTCCTCTCCGGTTTTAATGAGCCACTGGATTTGCTTTGTTTCATTCCATCCTAGGGATTTGTTGACATGTCGTAGTAGTCATGCCTGTTTGGGGGAAGGGAATGAGTTTAGCAGTTTACCAAGAATGGATCAGTCATGTCTTTGCCCTCCAAGAGGTCGGGGGTCACTTGACTCAGAATAGGGGGAGGGCAACCTTGAAGGGGGCAGATAGGGTTATTTTATTGAGAGGCCATAGGGAAAATAACCCTTTTGAGTCCTTCCAAGCAAAACGTTTTCGTATATTTAATGAGGCCTTTTTTGTTTGTTTTACTACGTTTTTAGCGAGGGACTTTCCTATGCTTCAGCTTATAAATAGGAATTTGTGAATTAGACGCTTCCATAAAGTTTTCAGTAAATTTGCAGAGCAGCACGTGCTTGTTAGATGGTAGCGGTAAGTTTAGCACGTTTCCTATTTTACGAGTTGTTTTGGGATGCAAAGTGTTAAAAAAAATACAGAGCATCAGGATTTGCTGTGATAAGCATACAGATTAGCTGTCCACAGCTGTGATTCATTACTTTCACCGTAGAAATTAAAAGTGGCTGAGGGGAGGGTACTGCAAATGCAAACCACGCTTCTGTGCTGTAAAACTGAAAGGAATGAAAGAAGTGAACATAATCCATGGCCTGGTACAGCCTCAGAAATGTGTAAGGACAACACCTTACATGCTACAGTTCAGCAATCTTAAACTAGTTACGGCTTCGCTCTTCAGTTGAAACTGCGGAGGGAAGTTAAGATTTAAGATATTTTTAAGATATCTGCGTCAGCTTCAAAACTCTTATCTAAGAAGAGTCGATTTATCAGCTGTGAAATATTTACACTGCAG
Seq C2 exon
ATCAAGATGTGGGAGATAACGGCCGCAGCCTTGCTGGCAGAGGAGGCTCGCCCAGAGGAAGTCTCTCGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACACCCTACCTGGATCA
R:
CGTGGCGAGAGACTTCCTC
Band lengths:
191-1527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]