GgaINT0103679 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75682822-75684124:+
Coord C1 exon
chr1:75682822-75682955
Coord A exon
chr1:75682956-75683940
Coord C2 exon
chr1:75683941-75684124
Length
985 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGC
5' ss Score
5.9
3' ss Seq
TCCTTTCCTCTTCTTTCCAGGCA
3' ss Score
10.98
Exon sequences
Seq C1 exon
CACTGGACTAGGCTGGGTGGATGTTTTACTCACCACATCCTGTTCTGCACCATGGGGAAAGATGGGTCCAGCAAATTAAACATCTTCATTCTCCTCTTCTTCCTCTCTGGAGACGCTTCACCCGTCACAGAACC
Seq A exon
GTAAGCTACACAGGGGAGACTCTGGGCAGGCTGGAGACCTGAGTTTATTTCTCTACTTCTTTGTCTTTCATCTTTCAACTACCTTCTTTTACCTTGAAATAAAGACACAAGGGCTGAGTAAAATGTCTTCTACAAAAAGCAGCTCTAGTACTTTTAAGGGACCCAGAAGAGTCTGTGCAATTGAGGTATCAGTAAAACTGCAGCCTAAATAAATAAATAAAAATGCAAAGAAGGAGAGCAGAAAGAAAGAGCTTTTGCTTTTTCACAGAGCTGACAGGATTTTAGCAAAACTTCTTGCACCGAATTGATTATTTACTTAAAAGACAACTTTTTATAACTGTATACACACACATTTTTTTCTTCAGAGAAACCGTTTTTGAAAAGACAAACATTTTGTTCATTTTTTGCTTTACTCCTAGGTCTAAATGCCTGGGAGATGTGAGTGGTTTTTTTGATTGATAACACAGGGGAAAAAAAAGGGCAAATGACAGATCTGGCATGACCAAAAATGGTTTTATTTCTTAATTCATATTTTTCTGAAGAAAATTTTTCAGAGAAAATTTTTCAGAGAAAATTTCCTTCTCACCCAGGGTTATACATCACTGTATGTGACGTTTAACTAACTGTGGCTGTTAGATCTGTGGGGTGCTAGCAGACAGCAAGTCTTATTGCATTCTTTCCTCCCTCCCTTTTGCCCTGTGAAGGAGTGACAAACATTGTCTGGCAAAGGCGACAATTGACTTTTTGCTCTTTTCACCACACCATTCATGGTCTCAGAAGATAGTGTTTCTGTTGTGCTAGAGCCTGGAAAAAATATCCCTTCCAGACATTTGCACTGAGAATTTTCTGTGGCATTTTACTTCCAACAGCAGCCTCTCTGCTTTCCCCTGCTGTTAACAGACGTGATAGAAATCCTCTTCCTGTAGCTCCAGCTCCAGCTACCTGTTCCTGCACATCTCACCTAATCCTTTCCTCTTCTTTCCAG
Seq C2 exon
GCAGTACATGGTGCTTCTGCCCTTTCTGATACACACTGATTCTCCTGAGAAAATCTGTGTTCAGTTGACTCACCTGAATGAGTCTGTGACACTGAATGCTGCAATTGAGTATCAAGGGGAAAACAGGAGCTTGATTGATGATGTGGTGTCGGAGAAGGATTTGTTTACCTGCATTCCTTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGACTAGGCTGGGTGG
R:
AGTGAAAGGAATGCAGGTAAACA
Band lengths:
318-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]