GgaINT0103682 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75686122-75686699:+
Coord C1 exon
chr1:75686122-75686174
Coord A exon
chr1:75686175-75686678
Coord C2 exon
chr1:75686679-75686699
Length
504 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTAATTTCTCCCCTTTCTAGCTT
3' ss Score
10.18
Exon sequences
Seq C1 exon
TCCTTTTCAGAATTGTTTCTCTGGATGAAAACTTCCATCCCTTGAATGAGGTG
Seq A exon
GTAAGTATGACACTTCTTTTCAATCACTGTTTGGCTGTAAGTCACCTTTGTGGGAAAACTGAGGAAAGAGGTGTCTTTTGTGGAGAACTCTCAGTACACAGAGATAGTTGTGCAATTCCCAGGTTATTTCAAATCTTGCTAACAGGATCTATTCTTCAAATTTCTGCATTCTTGGAGAGGTTACAGAATATAACTTTAAATTAACAATGCTGGTGTGAAAACCTCAACAGTGAGAAAGTCTGCCATTATCACAGTGGATATGTACCATAGTTGGTTTTAGCTGACTTTTCTGTTCTGCGCAAATGCTTAATACAAATGGTTGCCACTCTCTTGATGTACATCAAAGTGCTCTGTTGTTCCCTATCAGGGGCTTTCTTCCTTATCCCACTGTATTATCAGCTTTTTCCCCCAAATATGTTTGTAGCCCTAGACATTTGACTGTACTGTTTGCACTCTCTCTAAGCATGGATTCTAAATATGCTGTTTAATTTCTCCCCTTTCTAG
Seq C2 exon
CTTCCGCTGGTCTATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(18.1=100)
A:
NA
C2:
PF0183514=A2M_N=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]