GgaINT0103691 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79348962-79349621:+
Coord C1 exon
chr1:79348962-79349025
Coord A exon
chr1:79349026-79349478
Coord C2 exon
chr1:79349479-79349621
Length
453 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
GCTCTTGTTTTGTTTGCTAGTCA
3' ss Score
6.04
Exon sequences
Seq C1 exon
GTGATGGCCAAGGGAATCATCAAGAAAGCAGGCACCAGCATTCTGGATTTGGACAAGGAAAGTG
Seq A exon
GTATGTTTCCCTCTCCTCACAAATAGTCTCTGACTTGGGAGATTATGCAGCTGTGGCAGACACACAACCTACTTCCATGGGGAATGCAGAGATCCACTTCTCTATGTTGTTGGAAGAGTTTGAACTTTCTTTTCTGTTTACTTGGTTTTTGCATAGATTTGCTCTAGCCTTTGTGCTACCTCTCTTTTTATTAACAATGTATTTCTGGGACTCCAGTGCACCTAGGACACACAGTCTGGTGTTCTGTTTTTAGAAACGGAACTCAAATTCAGCTTGCTTATGTATTCAGACAGTGAGATTTACTTATCTCTGTGAGAACAAATTCATCCCACTTGGAGTCATAGTTTCATTATCACTAGGATGAAGTTCAGCATGAAGGGAAACCTGGAAATGTGGCTGATCCAAGAGGAGGTTTCCTGTAGTTCAACTTTTTGCTCTTGTTTTGTTTGCTAG
Seq C2 exon
TCAATGGGGTCTTCATACTACAGCTGCCTGTGGAAGCTGACTTTGCTCCTGTGGCCCAAGTGCTTGTCTATACTGTTACCCCCAGCAGGGAGGTGATTGCAGATTCAACAAAGTTCAACATAGAAAAATGTTTCAACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(14.1=100)
A:
NA
C2:
PF077039=A2M_N_2=FE(31.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGCCAAGGGAATCATCA
R:
TGTTGAACTTTGTTGAATCTGCA
Band lengths:
184-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]