GgaINT0103694 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75696625-75697535:+
Coord C1 exon
chr1:75696625-75696795
Coord A exon
chr1:75696796-75697393
Coord C2 exon
chr1:75697394-75697535
Length
598 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
GTTCTGTTTCTCTCCCATAGGAA
3' ss Score
12.7
Exon sequences
Seq C1 exon
GTGTATAGCTTGCTGCCAGTGAAGGAATTGCATGACTATCACCATGGTACAGACATGCTCTTGGAGGAGCCCTTAGAAGACTGTGTCCCCCTTAAGAAAATAATTCTGAATGGGATCACCTATTCTCCAGTAGTGGAGATGAATGAAGATGACACTTACAGCATTCTAAAG
Seq A exon
GTATAGCCCTCTAGTACGGGAGGAGGAATGAGAAAGAACACCTTCTGTTGTATGATGCAACATAACAAGGGAAAGACTTGTGAATCTCAGTAGTCAAACACTGATTTTTATCCAGAGGCAAGTAAGAATTATAAGTTTCACCTGTCTTACCATCTGTGTTCCTAGCTTGAACTTGAACTCATCAATCTCAAAGTTTTCTTTTTATGTGAAAAAAACTGAGGTTAGCTTGAATTGAAGTTCTAACTCAAGTTAAACAATTCTTTGCTATTACAGTTACCCCAAACAAATCAGTATGTCCTTGAGCAGCATTGTAGCCACAGATGTTTCCTTCCGAGAGGAGACTTCATATCTAATCCATGGCTCATCCTGACCCCTAGACTGGGATTGGACTGCAACTAATATCCTAAAGACAAGAGATCTATTCCTTAGCTTTTCTGAGCCACCCAGGACCAGGACTGAGAGGGTCATCTCAGGCTCCAATCCATAGGCAATACAGTTGTTACTTTTGAGGCAGAAAAGTATGAACAAATAAAGTAAAAACTTTTTTTTTTTCAATAGGAATGAGTACCCAAAAACATGTTCTGTTTCTCTCCCATAG
Seq C2 exon
GAAATGGGTTTAAAGGTTTTCACAAATTCCAAGGTAAAGAAACCTTGGTATTGCAGCACTGAGAGTTACGCGCCTGCAGGAATTCACATTGCAGCAAGTGAAGGCCTGGCTAGAACACCTACGTATGCATTGAGGACAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATAGCTTGCTGCCAGTGA
R:
CGCTTGTCCTCAATGCATACG
Band lengths:
313-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]