GgaINT0103697 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79353948-79354576:+
Coord C1 exon
chr1:79353948-79354176
Coord A exon
chr1:79354177-79354449
Coord C2 exon
chr1:79354450-79354576
Length
273 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
CGCCTCTCTACAAATGGCAGGTC
3' ss Score
4.76
Exon sequences
Seq C1 exon
CTCTGAGGGAAACGCTGAACTAGATGTGACCATCCCTGACACCATCACTGAATGGAAAGCCAGTGCATTCTGCATGTCCCCAGACACAGGCTTTGGCCTGTCACCAACAGTGTCCCTCAGAGCCTTCCAGCCTTTCTTTGTAGAGCTCACCCTGCCTTATTCTGTAGTGCGTGGTGAGGCCTTCACGCTGAAAGCTACTGTTTTCAACTACCTGACAGCCTGCATCAGA
Seq A exon
GTAAGGAAGATTTAAATCCTTCTCCATACCTGTAACTTCTTGTATGCTTTTTGCCTACACCTAGCCTTCTTTCTTATCCCTGAGTAGCCTTAGACCCCTCCCTCCCTGAAATTCTTATGTTATACCTTCAACATGTTTGAAATGCCGGAATACAACTCCAGCTTCCTGCTCCTTTGCTACAGAAGAAACAGACATTGCTAATTTTTCCTAGCAATCTGTGTTCTCCCTTTCTCTCAAGATCATTCCTTGATTACGCCTCTCTACAAATGGCAG
Seq C2 exon
GTCAGCGTGATTCTGGCTCAGTCTACTCAATTTCTGGCTACTCCAGTGGAAAAGGAGGAAGACTCTCATTGTCTCTGTGAGAACGGGAGGAAAACAGTGGCTTGGCTGGTGACTCCCAAATCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
NA
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACCATCCCTGACACCAT
R:
TCCTCCCGTTCTCACAGAGAC
Band lengths:
296-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]