GgaINT0103698 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79354450-79355333:+
Coord C1 exon
chr1:79354450-79354576
Coord A exon
chr1:79354577-79355211
Coord C2 exon
chr1:79355212-79355333
Length
635 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
GACTGATTTATTTCCTCCAGGGC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GTCAGCGTGATTCTGGCTCAGTCTACTCAATTTCTGGCTACTCCAGTGGAAAAGGAGGAAGACTCTCATTGTCTCTGTGAGAACGGGAGGAAAACAGTGGCTTGGCTGGTGACTCCCAAATCTCTAG
Seq A exon
GTAAAAGTCGAAGAATGCTGAAAACTGCAGGAAAGAATTCTCTGTGCTGTTCTCCCATTTCGGTATCTGAAGTTAGGGCTACTGGTTCCTGGAAAATACTGCAGCTGTGTGTATCATCTGAGGTTATGCGAGAGGTAAAGCCTGGTGGATTCATAGTGTCCAAGGCCGTGTCTAGCACTAAATGAAACATCATCAAATCTTACAGCTCTTGGGCAACATCTTCTGAAGCTACAGGCATTGCTGGCTGGCAAGGACATTTTGTCAGCTTCATCCCTCTCAGAGATCAGACGATTGCCCTATGAGACCCCCACAGTTTGCTTTTGCTGTTGTTGTCTGTTGTGGTAGCAGTCATGGTGTGCATGCAGAGTAGCAGACTGCTAAACAGCATTGTGGGACTGGTGAGTTCCACTACCGTGGTGCTCACGTTCTGAATAAAAGCACCAAAATAGAGTCACCTTTCAATGGCAGCGCAGCTCACCCGCTCCAGGATTCACTCTGATACAGATAGCTAAGCTTCCACAGGAAAGAAGCTGGGCCCAACTGTGATGGGCCTCTAGGCTGAAAACTCCCAGAAACAGCAGCAACTCCTGCTGCATGGTGCTGCTAGGCAGAACTGACTGATTTATTTCCTCCAG
Seq C2 exon
GGCTGGTGGAGTTCTTGGTGAGCACTGAGGCCCTCCAGAACCAGCAGCCATGCAGAAACACCACAGTGGAGACCCCTGAAAAAGGGCGGAAGGACACAGTCATCAGGCAGCTGTTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.293
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCGTGATTCTGGCTCAG
R:
CACCAACAGCTGCCTGATGAC
Band lengths:
246-881
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]