GgaINT0103708 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79363364-79363997:+
Coord C1 exon
chr1:79363364-79363582
Coord A exon
chr1:79363583-79363869
Coord C2 exon
chr1:79363870-79363997
Length
287 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCTGCTGGCTCTCCCGTAGACA
3' ss Score
6.71
Exon sequences
Seq C1 exon
GACACAGTTGTGGCTCTGCAAGCCCTCTCCCTGTATGGAGCTTCCACCTATGCCAAGAGTGGAGCAGCTTCCAAAGTGTCCCTGCGATCTGGAGGAGACTTCCAGCAAGACTTCCACGTGGATCCCTCAAACCGGCTGCTGCTCCAGCACGTGGCCCTGCCCCAGGTGCCAGGGGAATACAGCATAGAGGTGTCTGGCAAAGGATGTGTCTACCTGCAG
Seq A exon
GTGAGGGTGGTGGGGAAAGTGCTGTCCTGGGAGGGGAGCCCTTTCTCAGGCAGGAGCCAGGGGGAGGGCAGAAGGGATAAGGGTGAGGGGGATGAGTGCAACGGAGAGCTCCGGGAGAGGCCAGAGAAGAGTAGAGCTGTGTGGAGAATGGAGCGAGAGGGAAAGAGGGAGAGAGCCGTGAGTGTTGGGGAGCTGTGAGAATGGGGAAGGGAGAGAGCTGGGCAGGCAGATGATGATCTCTTTCATGCGTTGAGCATGCACACACGCAGCTGCTGGCTCTCCCGTAG
Seq C2 exon
ACAAGCCTGAGGTACAACGTGCAGCCCAAGCAGGAGAGTGCACCCTTCCTGCTGCATGTGCACACGAGCCCAGAGACATGTGAGGACTCCAAGGCTCACAAGGTCTTCGACATAGGCATAAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=17.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCTCTCCCTGTATGGA
R:
TTGTGAGCCTTGGAGTCCTCA
Band lengths:
302-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]