GgaINT0103713 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79366019-79366966:+
Coord C1 exon
chr1:79366019-79366060
Coord A exon
chr1:79366061-79366791
Coord C2 exon
chr1:79366792-79366966
Length
731 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TGTCCTTTTCCTACCTCCAGCCA
3' ss Score
9.87
Exon sequences
Seq C1 exon
ACGAATTTGCCATACAGGAGTACAGTGCTCCCTGCACCACAG
Seq A exon
GTAGGGTACATAGGAATAGATGGCCTATTGCAAATTATTTTGAATGGAAGTCTTTTGCAAACCTTAGGTTTCCTCAGCCTACGTACAGTCTCTGAGCTTGTCTTTACCATGCCTACAGCAGTCTTGAGAAAATAATGAGGGGGAAAATAATGCTGGACACCCCATGTTATATTTCATTTTATTCACCGAGACTGTGAATCCCAATATTATTGCCTTAAGTCAGACAGAGGCACTTTTCCTGTGTGTGTTTCACGTTGTATGAATGAGACTGAAGTCTTGCTTGGGATGGAGCACCATGCTCAGCCTTTGCATATCTACCTTTTTCAAGGCCACTTTCACCATGCTGCAGATACACAAGTGCATTGAGGAATTGTCTCCCAGCCACCTTGGTGAAATGTTCACATGTCTTCTAGCAAATTTCAAGCTTTGCCCTGGGTTATTTTTTCCGATCCTGTGGGAAATGCAGGTGCCAAGAGACAACACTTACTGTGATAGCTCATGCCTCCCCTTCCTTCTCCATAGCATGGATATAATGAACATGTCCAGCCATTCCCAATGTGTTATCCTTCTACAACGTGGCAATTTTAGGTGATGTAGGTTCCCAGATTTTAACACGACTTAAGCTCACGTGGCACAAAAGGGGCTACCACAGGATGCAGAGAAGTCGTCCAGGGTTCTGGGTATTGCTTCACCAGGAATTCTCTCTCACTCTGTCCTTTTCCTACCTCCAG
Seq C2 exon
CCAAAGCTGAACAGGGAAATGCCTGAAGAATACATCTGAGCCCTGATGGATCAGCTGACTTGTTTCTGCCGTTAGTAGTCTACCTTAATGAGTCCTCTAAAGTGTTACATGTAAGGATACCTCAGCACCAAAAACAAAGCAAGTCAACACAATTAAATAAAGCCTTGATCCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.625
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.0=46.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATTTGCCATACAGGAGT
R:
GGGAGGATCAAGGCTTTATTTAATTG
Band lengths:
217-948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]