GgaINT0103734 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79388092-79392616:-
Coord C1 exon
chr1:79392547-79392616
Coord A exon
chr1:79388273-79392546
Coord C2 exon
chr1:79388092-79388272
Length
4274 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGC
5' ss Score
5.9
3' ss Seq
NNNNNNNNNNNNNTTTCCAGGCA
3' ss Score
0
Exon sequences
Seq C1 exon
GGCTCTTCGACGAAACAGTTATCTTTCTCCTTTTCTTCTTCCCTGGAAACATCTCTCACACTGCAGAACC
Seq A exon
GTAAGCTACACATATGGAAGAGGGAGGGAGGTCACAGTGCTTCTTCCAGTAATTTTAATTTCTTTCTCTCATTCTTCAAACAGTTGTGACAATTTCTTCTACTTCTGCCCTGCATCCCACTACTAGCCCATCTCCGGCTCTCCTGAATAATTCTGACAGTGTTCCTTTTTCTCTCCTACAGCCTTCTGCTAGTCCAGCCCTGTATCATCACAGCATCTCTGCCTAAATACAGTCTTGCCTAGAAATCTTCAGATGGCTCAGCTTTTGTGAGCATGCATGTACTTACCTTTCCTGTAGTATCCTTGTTTTGATCACTGTTCTTCTGTTCTTGTTTTTTTTTTCCCAAACTGGTTTATTCCCTTTCTTGTGTTTCTTTCAAGACAGTTTGTTTCTCTTGGCAGCATCAGACATGCTTGTTCTCAAAGAGAATCTGTGACCTAGATTCTCTTTCACCAGCATTGAGCCAGGCGCTGGCACTCTCCCTGGTGTGTCCACCCAAGTGCTCTGCAGACAAGCTGCATGGCTGCAGTGTCCACCCTGCTTGGAGTCCCAAGCAGAAGGTATACCTGAGCATCCCCACCATGATCTCACCTACCAAGAGGGTTGTTCCACAGTCTCAGATCCAGGCAGAGCCATCTCATTCTTCAGACCTTGCTGCTATCATTGTGCTTATTACTGTGCTCTCAAGCACAGTTCTCTTCTGTGAGAAATAGGAGCAAGGGGATAAACCAGTTTGAAAAGATAATGAGGAGCTGCAGTTCTGAACCTCATCTCATGATGCCTGCTAGAGATTTCATGCTCATAAGCACTGCATTAGCACTGGTAGGTATAGTATAACACGCAGCATTCACTGCTGTTGCTTACTGTGTGGTCAGAGGTGAAGTGGTAACAGACTAAAAGCTAAAGGATTTTTGAGTCATACTGTGCCATCACCATCTCATTCATCTGTCCTATTTCACTGGTTCTAGAGTAGATCAGCCAGCCAAGTCTTTTCTGGGGTCATATAGGTCTCCCTGGTAGGGAGACCAGAGAGCTCTATCTCTTGTTATTTCTGCCCAGGATCAGGTGAAAAAGGCATGAACCCATACTGTTGAGTCCTCCCATGAGCAACATGTTGCTCTTTTCCCCTTACCTGAGCACCATTGTGGGAGGAGAGAAGGAGAAAATGTTGAAAGAGATGGGATAAAGAGAGATGTCAAGTCTTCCAAGTCAAAACAAAATGAAGCTTCTGACCAAGATACTTTTTGCCTGAGGAGACTGCTTCTTTGAACAGCAGCAATTGCTGTTCTTTCTGCTTCAGGTGTGACCAGCTGCTCAAGAGAGGCAATAAAGTTTCAGATTGGATACTAGAAAAAAACTTATCATGTTAATGCAGCATTGAGATGGCTGACCCAGAGATGCAGTGGAGGCCAAAATTCCCTATGAAGTAGGTCACACTGTCCCCTCAGACTGGATGTTGCACGCAGATTGCCAGTGCTACTGGCAGGAAGCAGGGGAAAAGAGATTAGAGGAAGCACAGGCTGAAGCTATGGTGAGAAGGTTGTGAAAGAAAGTGATGGAGTAAGCATCTAGTTAATGTGGCATAATCAAAAACTTTAAGTCATTCCCTAAGTGGTTAGAGGTTCCTCCTTTCACTGCTTCTGCAGATAGTGGCTGGAGATACCTGCTGGTTTCTTACCACATTTTCCTTCACAATCAGGCAAATGGATCCCACTGCCTCCAGTGTAGCTTCAGGATTGCCCTAGATGTCTCTTTTCCCAAGACTGAAAGAAGACCACCCAATTTCTGCGTTTCTCACAATAGTTCTCCATGAACATACTCAGTCCTGTCAGTAACAATTTCTTTGCTCAGTTGCTCTGGATATAACTCCCATTCCCCAACAAAGCTGTTAGTACTGCCATACTTTTTCCTCGGTCACTTGTAACTGTGTGATCTTTACAAAATGGGGTAGGTGGTCGTCGTCTTCCCTTGCTGAATCTCATACCAAATTTAATGTAGCTGGAACAGCAAGACACATATCACATCCTAGAGTTACCAGAGGCTTATTTTTAATGGGCTGCACCTCACTGGATGTGCAAGCAGGGTACCAGTTATCCAGTTTAGTTGTATCTGTTAGCTCCTTTTTCTCTTTACTGAAGGAAGGACAGTCAGCTGCTGTTTATCATGTGATGCAGCCTGAGTATATTTGCTATCTTGGATTGCTTGAGAGTACCAGAAGGTTCAAGAGCCACAAGCTAGTCATACCAAAATTAATCTTCTGGGCTTTATAGTACCTGATGACATTAGGTTCCTTGATTTAATTTGATATTTTGGCAAAGAAGTTTATGCTTTATTTTACTAAATGACTCAGTTAATATTTTAATGTAGCATTGTTTAGTATATCCACTGTCACAGGTGATGAACAATATCAGTTTTCTTTCATTCCTTTTTCCATGCTAAAGAATGTTAATCTTCCAGATTTCAGACTCTGGCATCTTTCAGTGAATATTCTCTTCTAAATCCCATTTTTTAAAATGAGAATATAGCAACGTACCTTTTAGTTATACAATAGCTAAACTGTTTGTTCTGATTTGTTCTATATTCCTTTATTTAAGAAAAGAGAGTTAAGAATAGCTCCTTACAGTCCATTTGTCACTTATCTCTGAATGAGGATTTTACAAGAGTTCTTGACAGTGCTCATCTCCAAGTAGTAATAGCAAATTTAGCTATGTGTACACTGTTGGGGGTGACATTTCATTCCTTAATTCGTTATTTTCCCTTCATGAACAGTTCATTTGCTATTTTTTCTACACATTTCCACAATACAATCAAAGTTTTTCACAGCTACGCTAGTCAGTACCTCACAGATTATTCATCAGTAGACTGAGCAGCAGGGATCTCTACACAGATTCTTGAGATTTTTACTGGTGACCACCTTCGGCTATATAAATCCACTATTATTTCTTCCCCTTTATGCCCTAGTTTTTAACCAATTAATCTGCATCAGAATTAATAATTGGATTTATTAATGAAAATTAGTAAAATTATCCCTTCTATTGAATGTCAACTGATGTCTTCTCCGAGAAACAAAAGTTCTTTGAAAGTACAAGTACACTTCTGTTGTAATAAAGCACTGTCCTCTGAAATGCTTTGTGTGACCACCTTAATAAGGTTATGAACTGCAGCACTCCCATTTTTGCTCAGCACGAGGAGGATTTGGAAACCTGGACAGGCAAGAAAAGGAGTAGCTACAGAAGTTGGAGTTTTTTCAACCCTAGAACTGCTGAATCTCCAACTTTTTTTAGCTAATGCTTTCGAGTCTCATGAGGCTGTGGGATACAAAAAAGTTGAGTAACAGCCTGAAACTTTTCATGCCATCCTTATTCCCTACTGTGAAGCTGAACAAAGCAGCCTTTATAAAGGACTGTCTATTATTAGTGTAGAAATTGTTCCTTCCACTGAAAGAATTTTCCTTGTTATTAGGCTAATTAGTTTGGTGGTTTGACATGTATAAACCCAAAGTAAGATGTATACTCATGTTTGTGCACTGAATTCAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCAG
Seq C2 exon
GCAGTACATGGTGCTTCTGCCCTTTCTGATACATACTGGTTCTCGTGAGAAAATCTGTGTTCAGCTGACACACCTGAATGAGTCTGTGACACTGAGTGCTACACTTGAGTATCAAGGGGAAAACAGGAGCTTGATTGATGTGGTGACAGAGAAGGATGTGTTTACCTGCATCCCTTACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]