GgaINT0103744 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79374469-79375152:-
Coord C1 exon
chr1:79374991-79375152
Coord A exon
chr1:79374697-79374990
Coord C2 exon
chr1:79374469-79374696
Length
294 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
TTTTTATTCTTCTTTATCAGGCT
3' ss Score
9.32
Exon sequences
Seq C1 exon
GTAAAGCTGGTAGATGGTAATGATGCTCCCATTGCCAATGAAACCATCAGGATTTCTGTGAATGGAGACACGTACAAAGGCAATTACACTACAGATGAACAGGGACAATCCTGGTTTTCCATCAATACTACCATGTTCACAGAAGCCTCCCTGGAAATCCGA
Seq A exon
GTGAGTGGCAGAGACAAGGCAGGGGGCCTTGAATAAGCCTCTGTCTTTTTTGTTCAGCAGAGGAAACATGTTTCCATAAGCCAACAGCCTTTGTTCCAAAAAGGAGATGAAGCAAGTTTTCCTAGCAGGTCACCTCTCTTCTCTGTCTCCCGTGCATGTTTTTCTATGTCTCTTTTTCTTTACTTTCACCTAAGAATGAGAAATACAGAGCATAGCCAGAGTTTGCCCATGGACATTCATGTGACTTGTTACCTGGTTTTAGTCAGCTGTGAACTTTTTATTCTTCTTTATCAG
Seq C2 exon
GCTGAATATAAACCTGAACTGAACTGTTATGACAGTGACTGGATCACACCTTCATATGAGCATGCCATGCACAGAATAAGTCGGTTTTACTCCCCCAGTAAGAGCTTTCTCAAAATTGAGCCCAAGTTGGAGATGTTAAGATGTGGCTCTTTCGCAGAGATCCAGGTGCACTATATCTTCACACCAGAGGCCATTGAACAGCAGAAGAAAATTATCATTTACTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077039=A2M_N_2=PU(26.4=51.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCATTGCCAATGAAACC
R:
GCACCTGGATCTCTGCGAAAG
Band lengths:
307-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]