GgaINT0105017 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79492984-79493981:-
Coord C1 exon
chr1:79493825-79493981
Coord A exon
chr1:79493037-79493824
Coord C2 exon
chr1:79492984-79493036
Length
788 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGCT
5' ss Score
-0.35
3' ss Seq
TTGTCCTACATCTTTTTCAGTGA
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTTCCTCCTGCTACTTCTGATCCCCTGGCATTCATATCCTTCTCTGCCAAAGGCAACACAGTCAACTTAACTGAGAGAAGATCAGTGGCGATTGAGAATGTGCATAACACTCTCTTCATCCAGACAGACAAGCCCATCTACAAACCAGGGCAAAAAG
Seq A exon
GTTGCTGGGGAGCTGGAATCAGCTAGTGAACTAGGAAACTGAGTGCAAGAGTGGGTCAAGAATTTTCCTCCACAAGAATTTCTCTTGTGGAGGAAAAGTCCGCTGACTGCAATGGCAGTGTATAGCATATAGTGCATAATTGTCATTAGATAGTGCATATTGCCATCTGACAATGACCTTATCAAAATAGAATGAAAAATAGAATCAATTCACCAAATTGCAAGAAATGAGTAGGCTTCATTTATCTTTTCTAAGTTAATTTCATTTACAAAATCTTGAGTTCTGTTGTGTTTACTGAGATCAATCATGTAAAGAATGTCCTTAAGAATACAGAAAATAATAGGTTAAGCTTGGAATTAATAAAAATAAATAAAACGTAATTTCCTGTCAACAGCTCTTTACACTTTACTGCTAATCTAATTCATAGAGCTGTTTTCATTACTATATTCAAATAACTACTATCTGTGGTATAGTTAGTTATATCTTTAGTATAATCATGTTTCAGTGCTTCACATGGTTTACAATTAGATAAGCGCGCTTTCTTCCCTGTCTTTCATTTTTAAATTGAATTGGTTTGTAAAGATAGTTTCTTAGGAAATGCTCCAAAGTAATGAGTCCTTAAAGATGTTGGTCAGTATTAAAGATACTTCAGATAATAAGGTGTCCAGTTCTCTGAGGACTCATTGGTTCTTCCTAAAAGCCTGCACAAATTTTGTTTCAGTTATACATTGAAAGATACTTACCACTACCAAATCAAATGATCCTCTTTTGTCCTACATCTTTTTCAG
Seq C2 exon
TGATGTTTCGTGTGGTCACTTTGGATAGCCAGTTCAGACCTGTTCAGGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=30.2)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTACTTCTGATCCCCTG
R:
CCTGAACAGGTCTGAACTGGC
Band lengths:
200-988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]