GgaINT0105021 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75845828-75846737:-
Coord C1 exon
chr1:75846653-75846737
Coord A exon
chr1:75845946-75846652
Coord C2 exon
chr1:75845828-75845945
Length
707 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TGTATCTCATCCTCTCCTAGGTA
3' ss Score
10.11
Exon sequences
Seq C1 exon
TTCTGCCAAAGTTTGAAGTGACAACCAGCATGCCCAGGAGGATCTCTTTCTTTGATGAAAAAATCAGGGTGAATGTTTGTGCCTT
Seq A exon
GTAAGTATAAGAGCTGAGAATAACAGATGGGTAAACAAGAAACATAGGAAGGAGGATAGTGTGAAATGCTGAGAAATAAAGAACCCAGTACTGATTCACGTATAGACTAGAGCAATATTTTAGCTGTGACTTCCGTGACATGAAAAATAATGATAACTGCTACATAGCAGAATTAGAATTTTCTGAGTTTGTGTGCCTTAACAGTCTGAAGGTATTAAGTGGTACAAACTTGCTAGCTGTTGATTTTACTATTACAGAGAAAGAGAGAAATAGTAGAGGACTAGCATTAAAACTTCTGTATGTGACACTGCCAAGGGGCAGGGTAGCATAAGCCTGAGCAACAAGGACTGCCATACATCTTGCTTCATGTAAGTCAGTAATAAGAAAAAAAAAAAAAAAAAAACAAGCAGAAGGAAATGATATCCCAAAGACAAGCCTGGCATCCCTTTCCAGCTTCAGACCTTAAAGAATGACTTAACCAAGACAATAGTAAAGTAGGCTTTTTAAAGTCAAGGTCTGCCTAAAAATAATTGAGGAGAATTCAGGTAGTACTAACATGTTCTAGTTCTCAGCTACTTTTCTGTCTGTACTCTTGGCACTCCTAAGTGGTTTAGAGTCTATATGGCTTTGCAGTCATTCCTGGTTTCATGCTAAGTCCACCTTTACAGTTGGTCAGTATTGGATTCTTGTATCTCATCCTCTCCTAG
Seq C2 exon
GTACACTTATGGCCAACCAGTGCAGGGGAGTGCCCGAATCAATGTGTGTCAGCGACACTTTTATAATCCACAATGTCAGCAAAGCCAGAAACCAAGATGTGAAGCTGTCATTGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCAAAGTTTGAAGTGACA
R:
CCAATGACAGCTTCACATCTTGG
Band lengths:
198-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]