GgaINT0105022 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79487317-79488303:-
Coord C1 exon
chr1:79488186-79488303
Coord A exon
chr1:79487438-79488185
Coord C2 exon
chr1:79487317-79487437
Length
748 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGA
5' ss Score
5.24
3' ss Seq
TCTCTTTGCTCCTTTTTCAGCTG
3' ss Score
10.6
Exon sequences
Seq C1 exon
GTACACTTATGGCCAACCAGTGCAGGGGAGTGCCCGAATCAATGTGTGTCAGCGACACTTTTATAATCCACAATGTCAGCAAAGCCAGAAACCAAGATGTGAAGCTGTCATTGGATTG
Seq A exon
GTATGATACAGGGCTAAGCCTTTCTTCCCAGTGAACTTTATTACTCAACACATAGTGCATGGTTTGGAGATCTCATTTGTTTCCTGGAGTACATCAGACAGATAATCCCAGAAGCATATTTTTCTCACTGTTTTACAGACAATTCTGAAAGGCCATGCAGTTTTTACCAATGGCCTCATTAGGAGACAGGTTTTTGCCCCTTCTCCTCAAGAAAGCAGGAAAAGAGAAATTATTTTTCATTAGAAATTTGAGTTCTGTCTCAGAAGAGTCAGTACGAGAGAGGGGAGCTTATAAAATTATGAATATGTGATCACTCCTTAAACACTGGATGTGTGCACTTACCAAGGATAATCAGCAGACCTCTACTGGGAGTCTTTGAGGACAGTGTTAAATTGATATTTGATTTCTCATCTATATCAGATTCAAAGTACTTTAGAGAACTAAGCTCCTACAGGGGAGCTCAGACATCATGCAAAATGTGCTTAAGAAGGGATGTGAGTACAGAGAGGACTAGGGGAAGGGAGGAGAAAGGATTTCAGGTGCGTGGGTGTGTGAGATTGCAACAGTGAACTGGGAGGGGAGCCAGAGAGTGAGAAGTTTAAGATAGGAGGAGAGCAAGTAGGAGATAAAAGCTAAAGGAAATGCAAGCAGAGGCATGAAGCTCTTCAGAGACGCACTAATACAAGCTTAGGAGCATTTTTCCAAATCTCGAGAAAAATAAGTATTCCTCTCTTTGCTCCTTTTTCAG
Seq C2 exon
CTGGAAAACAATGGTTGTCTCAGCACTGTTGTCTCCACCAAAACTTTTCAGTTGTACCGCAGTTATGCCAGGATGTATGCCAGCTTCAACATAGAAACCATCGTCACTGAAAATGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAACCAGTGCAGGG
R:
CTGTCCCATTTTCAGTGACGA
Band lengths:
230-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]