GgaINT0105024 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75843763-75844716:-
Coord C1 exon
chr1:75844607-75844716
Coord A exon
chr1:75843922-75844606
Coord C2 exon
chr1:75843763-75843921
Length
685 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTGTATTCTTTGTGTTTAGATC
3' ss Score
9.06
Exon sequences
Seq C1 exon
GTATCCAGATGAAAAACTATGACTACGTTGCAGTCAGCCAAGAAAATGACAGAGTGATGTTCAGGAACATGGATCAGTACTACAGAAGGGGAATTCCTTACTTTGGTGAG
Seq A exon
GTGAGTAGCTGAGAAGATACATTAGAGCAGAACCTGAGGTCCAGCAGGATCTCTCCATTGCCCTGTTTGTGGCTGTCCCTTACCCTCTCCTAACAGCTTCCATTAATAATGTCACATAAAAATGACTGCTTCATATCTTTGTCATTATGTTAGAAACTTCTAGAGAAAATCAGAAAATTACACCCTAATGCCTAGTGTGTAAGGGAGTCCTTTCAACAGTGATTAGAGAATGCCTGAGAAATGACTAAATGAAAGGCCACAGGTGGTGAAGACAGATACACAAGAAACTAAGCTAGCAACAGCAGTGCCTAAGCTGAAGGTAGAATTTACCCTGCATTGTATCACACCATCCTGTGAATGTTTACTTAAAACGGTACAACTGCTGGAACACATCCAAATTCTTCCCAACCTGTACTCCCAGGATAAACTCTGGCACAGAAAGAAGGATGAAATGTATAGCATTCTCCTGATTCAGAGTGCAGAAGGAAGGTAGTGCGTGGATCTCAAAAGACAGGACGTGTTACTGAGCCCCATGTTACACGTTTGCCTCTTAAATACACATACTTGAGTTCTACTCTCTGCACATGTGATTAAGTTATTGTTCTCTGGTGAGCAGAATATTTATTATCCTTTACTTTTTTTTTTTTTTTTTAACCTGCAACTCCTGTGTATTCTTTGTGTTTAG
Seq C2 exon
ATCACTGTGACAAATGCAGATGGCAAGCCTGTTCCCAGTAGGGTTGTTGTGCTGGAGGTCAATGGAGAATACCAGGCCAACTATACCACTGATGAGAATGGCACGGCAGCCTTTTCCCTTGACACGTCCAACTTCTTTAATCCCACTGTTAAGCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236911=Big_1=PU(1.6=2.7)
A:
NA
C2:
PF0236911=Big_1=FE(83.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAAAAACTATGACTACGTTGCA
R:
TCTCAGCTTAACAGTGGGATTAA
Band lengths:
263-948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]