GgaINT0106483 @ galGal3
Intron Retention
Gene
ENSGALG00000016946 | SUGT1
Description
NA
Coordinates
chr1:170016980-170017844:-
Coord C1 exon
chr1:170017754-170017844
Coord A exon
chr1:170017050-170017753
Coord C2 exon
chr1:170016980-170017049
Length
704 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACA
5' ss Score
4.6
3' ss Seq
TGTAAACTGACTTTCCACAGATG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GAACTGACAAGAGCTTTGGAAAAGAGTCCAGATGATGCCGAATATTATTGTCAACGAGCTTATGCCCATATTCTTCTACAGAATTACACTG
Seq A exon
GTAACATCTTCAGGCAACACTGACAATCCTCTTACAAGTATATTGTGACACATTCTTTATAGAAGATGACAAATCAGTAATAACAGAAAGCCTTAGCTGTAACTTAGTTGGCTGTTTCTGCAGTTAGGACATACTTGAAAGCTTTCCTCATCTTTGATTATTTTGTATCTGCAAAGCTTGTAGTGAATCTGATACTCGCAGTCTCAGTTTTCCATTGGAGTTCAGCACAGTACTATCTTGGAACATTATTTTCAGTAGACTTAGGTGGATTTTAAGCTTTGTGTTGGAAGCTCTTCCAACCGTACATGCTTCTTTGGTAGACCCTGAATCCACTTGTGGTAGGGAAAGTGATAATCTGCCACCCAGGTGTGGTTTGGTTAACTGAATTAACTCAACATTTAGCCCAAATTTCCTGTCAGTAATCACACAAAGTAAATAGATCAATGATGGTGATTCACAGTTCAGACCTAAGCAGAGGATTCGACTAAATGAAAGTCACTGCTTCATCTTTTATGGAGCTCTATAGCTGGTTGAAGACTTTACCCATAGCATTGTCTGAATTAAATTCACACAGTTTGATTTGTATGCAGGCTAAGAAAGCTAACACAGCAGTGATTTTTTTTCTGAGGCTTACTGAAAGACTTGCATTTCACTGCTTTTCATAATGTTATAATGATCTTCACCTGTAAACTGACTTTCCACAG
Seq C2 exon
ATGCAGTTGCAGATGCGAAGAAGTCCTTAGAGCTCAACCCCAGTAATGCTGTAGCACTTCTTAGGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016946:ENSGALT00000027390:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.8=100)
A:
NA
C2:
PF134141=TPR_11=PD(19.4=54.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]